Search Results for author: Alain Lalande

Found 16 papers, 4 papers with code

MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision

1 code implementation30 Aug 2023 Jianning Li, Zongwei Zhou, Jiancheng Yang, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Chongyu Qu, Tiezheng Zhang, Xiaoxi Chen, Wenxuan Li, Marek Wodzinski, Paul Friedrich, Kangxian Xie, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Viet Duc Vu, Afaque R. Memon, Christopher Schlachta, Sandrine de Ribaupierre, Rajnikant Patel, Roy Eagleson, Xiaojun Chen, Heinrich Mächler, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Vincenzo Ferrari, Soumick Chatterjee, Florian Dubost, Stefanie Schreiber, Hendrik Mattern, Oliver Speck, Daniel Haehn, Christoph John, Andreas Nürnberger, João Pedrosa, Carlos Ferreira, Guilherme Aresta, António Cunha, Aurélio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Vicky Vandenbossche, Aline Van Oevelen, Kate Duquesne, Hamza Mekhzoum, Jef Vandemeulebroucke, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Hauke Heidemeyer, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Timo van Meegdenburg, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin H. Bahnsen, Constantin Seibold, Alexander Jaus, Zdravko Marinov, Paul F. Jaeger, Rainer Stiefelhagen, Ana Sofia Santos, Mariana Lindo, André Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Yannik Hanusrichter, Martin Weßling, Marcel Dudda, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dženan Zukić, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Gregor Schiele, Ti-chiun Chang, Seyed-Ahmad Ahmadi, Ping Luo, Bjoern Menze, Mauricio Reyes, Thomas M. Deserno, Christos Davatzikos, Behrus Puladi, Pascal Fua, Alan L. Yuille, Jens Kleesiek, Jan Egger

For the medical domain, we present a large collection of anatomical shapes (e. g., bones, organs, vessels) and 3D models of surgical instrument, called MedShapeNet, created to facilitate the translation of data-driven vision algorithms to medical applications and to adapt SOTA vision algorithms to medical problems.

Anatomy Mixed Reality

Deep Learning Based Cardiac MRI Segmentation: Do We Need Experts?

no code implementations23 Jul 2021 Youssef Skandarani, Pierre-Marc Jodoin, Alain Lalande

Results reveal that generalization performances of a segmentation neural network trained on non-expert groundtruth data is, to all practical purposes, as good as on expert groundtruth data, in particular when the non-expert gets a decent level of training, highlighting an opportunity for the efficient and cheap creation of annotations for cardiac datasets.

MRI segmentation Segmentation

GANs for Medical Image Synthesis: An Empirical Study

no code implementations11 May 2021 Youssef Skandarani, Pierre-Marc Jodoin, Alain Lalande

The top-performing GANs are capable of generating realistic-looking medical images by FID standards that can fool trained experts in a visual Turing test and comply to some metrics.

Image Generation Medical Image Generation

Learning With Context Feedback Loop for Robust Medical Image Segmentation

1 code implementation4 Mar 2021 Kibrom Berihu Girum, Gilles Créhange, Alain Lalande

Therefore, formulating image segmentation as a recurrent framework of two interconnected networks via context feedback loop can be a potential method for robust and efficient medical image analysis.

Image Segmentation Medical Image Segmentation +2

Automatic Myocardial Infarction Evaluation from Delayed-Enhancement Cardiac MRI using Deep Convolutional Networks

no code implementations30 Oct 2020 Kibrom Berihu Girum, Youssef Skandarani, Raabid Hussain, Alexis Bozorg Grayeli, Gilles Créhange, Alain Lalande

The second network is used to segment the pathological areas such as myocardial infarction, myocardial no-reflow, and normal myocardial region.

Segmentation-free Estimation of Aortic Diameters from MRI Using Deep Learning

no code implementations9 Sep 2020 Axel Aguerreberry, Ezequiel de la Rosa, Alain Lalande, Elmer Fernandez

Our approach makes use of a 3D+2D convolutional neural network (CNN) that takes as input a 3D scan and outputs the aortic diameter at a given location.

Decision Making

Cardiac Segmentation with Strong Anatomical Guarantees

1 code implementation15 Jun 2020 Nathan Painchaud, Youssef Skandarani, Thierry Judge, Olivier Bernard, Alain Lalande, Pierre-Marc Jodoin

In this paper, we present a framework for producing cardiac image segmentation maps that are guaranteed to respect pre-defined anatomical criteria, while remaining within the inter-expert variability.

Cardiac Segmentation Image Segmentation +3

Segmentation of the Myocardium on Late-Gadolinium Enhanced MRI based on 2.5 D Residual Squeeze and Excitation Deep Learning Model

no code implementations MIDL 2019 Abdul Qayyum, Alain Lalande, Thomas Decourselle, Thibaut Pommier, Alexandre Cochet, Fabrice Meriaudeau

The proposed model could be used for the automatic segmentation of myocardial border that is a very important step for accurate quantification of no-reflow, myocardial infarction, myocarditis, and hypertrophic cardiomyopathy, among others.

LV Segmentation Segmentation

Deep generative model-driven multimodal prostate segmentation in radiotherapy

no code implementations23 Oct 2019 Kibrom Berihu Girum, Gilles Créhange, Raabid Hussain, Paul Michael Walker, Alain Lalande

We show that generative neural networkbased shape modeling trained on a reliable contrast imaging modality (such as MRI) can be directly applied to low contrast imaging modality (such as CT) to achieve accurate prostate segmentation.

Multi-Task Learning Segmentation

3D landmark detection for augmented reality based otologic procedures

no code implementations4 Sep 2019 Raabid Hussain, Alain Lalande, Kibrom Berihu Girum, Caroline Guigou, Alexis Bozorg Grayeli

Ear consists of the smallest bones in the human body and does not contain significant amount of distinct landmark points that may be used to register a preoperative CT-scan with the surgical video in an augmented reality framework.

Myocardial Infarction Quantification From Late Gadolinium Enhancement MRI Using Top-hat Transforms and Neural Networks

no code implementations9 Jan 2019 Ezequiel de la Rosa, Désiré Sidibé, Thomas Decourselle, Thibault Leclercq, Alexandre Cochet, Alain Lalande

Although the technique accurately reflects the damaged tissue, there is no clinical standard for quantifying myocardial infarction (MI), demanding most algorithms to be expert dependent.

Segmentation

GridNet with automatic shape prior registration for automatic MRI cardiac segmentation

no code implementations24 May 2017 Clement Zotti, Zhiming Luo, Alain Lalande, Olivier Humbert, Pierre-Marc Jodoin

In this paper, we propose a fully automatic MRI cardiac segmentation method based on a novel deep convolutional neural network (CNN) designed for the 2017 ACDC MICCAI challenge.

Anatomy Cardiac Segmentation +2

MRI-PET Registration with Automated Algorithm in Pre-clinical Studies

no code implementations19 May 2017 Nathanael L. Baisa, Stéphanie Bricq, Alain Lalande

Magnetic Resonance Imaging (MRI) and Positron Emission Tomography (PET) automatic 3-D registration is implemented and validated for small animal image volumes so that the high-resolution anatomical MRI information can be fused with the low spatial resolution of functional PET information for the localization of lesion that is currently in high demand in the study of tumor of cancer (oncology) and its corresponding preparation of pharmaceutical drugs.

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