Search Results for author: Amina Mollaysa

Found 8 papers, 1 papers with code

Attention-based Multi-task Learning for Base Editor Outcome Prediction

no code implementations13 Nov 2023 Amina Mollaysa, Ahmed Allam, Michael Krauthammer

To speed up this process, we present an attention-based two-stage machine learning model that learns to predict the likelihood of all possible editing outcomes for a given genomic target sequence.

Multi-Task Learning

Attention-based Multi-task Learning for Base Editor Outcome Prediction

no code implementations4 Oct 2023 Amina Mollaysa, Ahmed Allam, Michael Krauthammer

To speed up this process, we present an attention-based two-stage machine learning model that learns to predict the likelihood of all possible editing outcomes for a given genomic target sequence.

Multi-Task Learning

Generating Personalized Insulin Treatments Strategies with Deep Conditional Generative Time Series Models

no code implementations28 Sep 2023 Manuel Schürch, Xiang Li, Ahmed Allam, Giulia Rathmes, Amina Mollaysa, Claudia Cavelti-Weder, Michael Krauthammer

We propose a novel framework that combines deep generative time series models with decision theory for generating personalized treatment strategies.

Time Series

SimTS: Rethinking Contrastive Representation Learning for Time Series Forecasting

1 code implementation31 Mar 2023 Xiaochen Zheng, Xingyu Chen, Manuel Schürch, Amina Mollaysa, Ahmed Allam, Michael Krauthammer

Contrastive learning methods have shown an impressive ability to learn meaningful representations for image or time series classification.

Contrastive Learning Representation Learning +3

Goal-directed Generation of Discrete Structures with Conditional Generative Models

no code implementations NeurIPS 2020 Amina Mollaysa, Brooks Paige, Alexandros Kalousis

Unfortunately, maximum likelihood training of such models often fails with the samples from the generative model inadequately respecting the input properties.

Program Synthesis reinforcement-learning +1

Conditional generation of molecules from disentangled representations

no code implementations25 Sep 2019 Amina Mollaysa, Brooks Paige, Alexandros Kalousis

Though machine learning approaches have shown great success in estimating properties of small molecules, the inverse problem of generating molecules with desired properties remains challenging.

Style Transfer

Regularising Non-linear Models Using Feature Side-information

no code implementations ICML 2017 Amina Mollaysa, Pablo Strasser, Alexandros Kalousis

In this paper, we propose a framework that allows for the incorporation of the feature side-information during the learning of very general model families to improve the prediction performance.

feature selection

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