Search Results for author: Andriy Nikolov

Found 4 papers, 4 papers with code

OntoMerger: An Ontology Integration Library for Deduplicating and Connecting Knowledge Graph Nodes

1 code implementation5 Jun 2022 David Geleta, Andriy Nikolov, Mark ODonoghue, Benedek Rozemberczki, Anna Gogleva, Valentina Tamma, Terry R. Payne

Duplication of nodes is a common problem encountered when building knowledge graphs (KGs) from heterogeneous datasets, where it is crucial to be able to merge nodes having the same meaning.

Knowledge Graphs

ChemicalX: A Deep Learning Library for Drug Pair Scoring

1 code implementation10 Feb 2022 Benedek Rozemberczki, Charles Tapley Hoyt, Anna Gogleva, Piotr Grabowski, Klas Karis, Andrej Lamov, Andriy Nikolov, Sebastian Nilsson, Michael Ughetto, Yu Wang, Tyler Derr, Benjamin M Gyori

In this paper, we introduce ChemicalX, a PyTorch-based deep learning library designed for providing a range of state of the art models to solve the drug pair scoring task.

BIG-bench Machine Learning

A Unified View of Relational Deep Learning for Drug Pair Scoring

3 code implementations4 Nov 2021 Benedek Rozemberczki, Stephen Bonner, Andriy Nikolov, Michael Ughetto, Sebastian Nilsson, Eliseo Papa

In recent years, numerous machine learning models which attempt to solve polypharmacy side effect identification, drug-drug interaction prediction and combination therapy design tasks have been proposed.

BIG-bench Machine Learning

MOOMIN: Deep Molecular Omics Network for Anti-Cancer Drug Combination Therapy

2 code implementations28 Oct 2021 Benedek Rozemberczki, Anna Gogleva, Sebastian Nilsson, Gavin Edwards, Andriy Nikolov, Eliseo Papa

We propose the molecular omics network (MOOMIN) a multimodal graph neural network used by AstraZeneca oncologists to predict the synergy of drug combinations for cancer treatment.

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