Search Results for author: Anees Kazi

Found 20 papers, 7 papers with code

On Discprecncies between Perturbation Evaluations of Graph Neural Network Attributions

1 code implementation1 Jan 2024 Razieh Rezaei, Alireza Dizaji, Ashkan Khakzar, Anees Kazi, Nassir Navab, Daniel Rueckert

In this work, we assess attribution methods from a perspective not previously explored in the graph domain: retraining.

Graph Classification

Multi-Head Graph Convolutional Network for Structural Connectome Classification

no code implementations2 May 2023 Anees Kazi, Jocelyn Mora, Bruce Fischl, Adrian V. Dalca, Iman Aganj

To test the ability of our model to extract complementary and representative features from brain connectivity data, we chose the task of sex classification.

Classification

Latent Graph Inference using Product Manifolds

no code implementations26 Nov 2022 Haitz Sáez de Ocáriz Borde, Anees Kazi, Federico Barbero, Pietro Liò

The original dDGM architecture used the Euclidean plane to encode latent features based on which the latent graphs were generated.

Graph Learning

Unsupervised pre-training of graph transformers on patient population graphs

2 code implementations21 Jul 2022 Chantal Pellegrini, Nassir Navab, Anees Kazi

We find that our proposed pre-training methods help in modeling the data at a patient and population level and improve performance in different fine-tuning tasks on all datasets.

Language Modelling Masked Language Modeling +2

Graph-in-Graph (GiG): Learning interpretable latent graphs in non-Euclidean domain for biological and healthcare applications

no code implementations1 Apr 2022 Kamilia Mullakaeva, Luca Cosmo, Anees Kazi, Seyed-Ahmad Ahmadi, Nassir Navab, Michael M. Bronstein

In this work, we propose Graph-in-Graph (GiG), a neural network architecture for protein classification and brain imaging applications that exploits the graph representation of the input data samples and their latent relation.

Property Prediction

Unsupervised Pre-Training on Patient Population Graphs for Patient-Level Predictions

2 code implementations23 Mar 2022 Chantal Pellegrini, Anees Kazi, Nassir Navab

We test our method on two medical datasets of patient records, TADPOLE and MIMIC-III, including imaging and non-imaging features and different prediction tasks.

Disease Prediction Imputation +2

GKD: Semi-supervised Graph Knowledge Distillation for Graph-Independent Inference

1 code implementation8 Apr 2021 Mahsa Ghorbani, Mojtaba Bahrami, Anees Kazi, Mahdieh SoleymaniBaghshah, Hamid R. Rabiee, Nassir Navab

The soft pseudo-labels are then used to train a deep student network for disease prediction of unseen test data for which the graph modality is unavailable.

Disease Prediction graph construction +1

IA-GCN: Interpretable Attention based Graph Convolutional Network for Disease prediction

no code implementations29 Mar 2021 Anees Kazi, Soroush Farghadani, Nassir Navab

The main novelty lies in the interpretable attention module (IAM), which directly operates on multi-modal features.

Decision Making Disease Prediction +3

RA-GCN: Graph Convolutional Network for Disease Prediction Problems with Imbalanced Data

1 code implementation27 Feb 2021 Mahsa Ghorbani, Anees Kazi, Mahdieh Soleymani Baghshah, Hamid R. Rabiee, Nassir Navab

This is accomplished by associating a graph-based neural network to each class, which is responsible for weighting the class samples and changing the importance of each sample for the classifier.

Disease Prediction Node Classification

Simultaneous imputation and disease classification in incomplete medical datasets using Multigraph Geometric Matrix Completion (MGMC)

1 code implementation14 May 2020 Gerome Vivar, Anees Kazi, Hendrik Burwinkel, Andreas Zwergal, Nassir Navab, Seyed-Ahmad Ahmadi

As a solution, we propose an end-to-end learning of imputation and disease prediction of incomplete medical datasets via Multigraph Geometric Matrix Completion (MGMC).

Classification Disease Prediction +3

Latent-Graph Learning for Disease Prediction

no code implementations27 Mar 2020 Luca Cosmo, Anees Kazi, Seyed-Ahmad Ahmadi, Nassir Navab, Michael Bronstein

Recently, Graph Convolutional Networks (GCNs) have proven to be a powerful machine learning tool for Computer-Aided Diagnosis (CADx) and disease prediction.

Disease Prediction General Classification +1

Differentiable Graph Module (DGM) for Graph Convolutional Networks

1 code implementation11 Feb 2020 Anees Kazi, Luca Cosmo, Seyed-Ahmad Ahmadi, Nassir Navab, Michael Bronstein

We provide an extensive evaluation of applications from the domains of healthcare (disease prediction), brain imaging (age prediction), computer graphics (3D point cloud segmentation), and computer vision (zero-shot learning).

Disease Prediction Point Cloud Segmentation +1

Multi-modal Graph Fusion for Inductive Disease Classification in Incomplete Datasets

no code implementations8 May 2019 Gerome Vivar, Hendrik Burwinkel, Anees Kazi, Andreas Zwergal, Nassir Navab, Seyed-Ahmad Ahmadi

Recently, several works proposed geometric deep learning approaches to solve disease classification, by modeling patients as nodes in a graph, along with graph signal processing of multi-modal features.

Classification Decision Making +1

Adaptive Image-Feature Learning for Disease Classification Using Inductive Graph Networks

no code implementations8 May 2019 Hendrik Burwinkel, Anees Kazi, Gerome Vivar, Shadi Albarqouni, Guillaume Zahnd, Nassir Navab, Seyed-Ahmad Ahmadi

We propose a new network architecture that exploits an inductive end-to-end learning approach for disease classification, where filters from both the CNN and the graph are trained jointly.

Classification General Classification

Precise Proximal Femur Fracture Classification for Interactive Training and Surgical Planning

no code implementations4 Feb 2019 Amelia Jiménez-Sánchez, Anees Kazi, Shadi Albarqouni, Chlodwig Kirchhoff, Peter Biberthaler, Nassir Navab, Sonja Kirchhoff, Diana Mateus

We demonstrate the feasibility of a fully automatic computer-aided diagnosis (CAD) tool, based on deep learning, that localizes and classifies proximal femur fractures on X-ray images according to the AO classification.

Classification General Classification +3

Self-Attention Equipped Graph Convolutions for Disease Prediction

no code implementations24 Dec 2018 Anees Kazi, S. Arvind krishna, Shayan Shekarforoush, Karsten Kortuem, Shadi Albarqouni, Nassir Navab

A model capable of leveraging the individuality of each multi-modal data is required for better disease prediction.

Disease Prediction

Multi Layered-Parallel Graph Convolutional Network (ML-PGCN) for Disease Prediction

no code implementations28 Apr 2018 Anees Kazi, Shadi Albarqouni, Karsten Kortuem, Nassir Navab

Structural data from Electronic Health Records as complementary information to imaging data for disease prediction.

Disease Prediction

Cross-Modal Manifold Learning for Cross-modal Retrieval

no code implementations19 Dec 2016 Sailesh Conjeti, Anees Kazi, Nassir Navab, Amin Katouzian

This paper presents a new scalable algorithm for cross-modal similarity preserving retrieval in a learnt manifold space.

Cross-Modal Retrieval Retrieval

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