no code implementations • 8 Nov 2021 • Nadia Brancati, Anna Maria Anniciello, Pushpak Pati, Daniel Riccio, Giosuè Scognamiglio, Guillaume Jaume, Giuseppe De Pietro, Maurizio Di Bonito, Antonio Foncubierta, Gerardo Botti, Maria Gabrani, Florinda Feroce, Maria Frucci
Each WSI, and respective ROIs, are annotated by the consensus of three board-certified pathologists into different lesion categories.
4 code implementations • 22 Feb 2021 • Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani
We propose a novel multi-level hierarchical entity-graph representation of tissue specimens to model hierarchical compositions that encode histological entities as well as their intra- and inter-entity level interactions.
3 code implementations • CVPR 2021 • Guillaume Jaume, Pushpak Pati, Behzad Bozorgtabar, Antonio Foncubierta-Rodríguez, Florinda Feroce, Anna Maria Anniciello, Tilman Rau, Jean-Philippe Thiran, Maria Gabrani, Orcun Goksel
However, popular deep learning methods and explainability techniques (explainers) based on pixel-wise processing disregard biological entities' notion, thus complicating comprehension by pathologists.
no code implementations • 1 Jul 2020 • Pushpak Pati, Guillaume Jaume, Lauren Alisha Fernandes, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosue Scognamiglio, Nadia Brancati, Daniel Riccio, Maurizio Do Bonito, Giuseppe De Pietro, Gerardo Botti, Orcun Goksel, Jean-Philippe Thiran, Maria Frucci, Maria Gabrani
Further, a hierarchical graph neural network (HACT-Net) is proposed to efficiently map the HACT representations to histopathological breast cancer subtypes.
General Classification Histopathological Image Classification +1
no code implementations • 1 Jul 2020 • Guillaume Jaume, Pushpak Pati, Antonio Foncubierta-Rodriguez, Florinda Feroce, Giosue Scognamiglio, Anna Maria Anniciello, Jean-Philippe Thiran, Orcun Goksel, Maria Gabrani
Explainability of machine learning (ML) techniques in digital pathology (DP) is of great significance to facilitate their wide adoption in clinics.