Search Results for author: Anthea Monod

Found 10 papers, 8 papers with code

Computable Stability for Persistence Rank Function Machine Learning

1 code implementation6 Jul 2023 Qiquan Wang, Inés García-Redondo, Pierre Faugère, Anthea Monod, Gregory Henselman-Petrusek

In this paper, we revisit the persistent homology rank function -- an invariant measure of ``shape" that was introduced before barcodes and persistence diagrams and captures the same information in a form that is more amenable to data and computation.

Topological Data Analysis

$k$-Means Clustering for Persistent Homology

1 code implementation18 Oct 2022 Yueqi Cao, Prudence Leung, Anthea Monod

Persistent homology is a methodology central to topological data analysis that extracts and summarizes the topological features within a dataset as a persistence diagram; it has recently gained much popularity from its myriad successful applications to many domains.

Clustering Topological Data Analysis

Fast Topological Signal Identification and Persistent Cohomological Cycle Matching

4 code implementations30 Sep 2022 Inés García-Redondo, Anthea Monod, Anna Song

Within the context of topological data analysis, the problems of identifying topological significance and matching signals across datasets are important and useful inferential tasks in many applications.

Topological Data Analysis

Learning Linear Non-Gaussian Polytree Models

1 code implementation13 Aug 2022 Daniele Tramontano, Anthea Monod, Mathias Drton

In the context of graphical causal discovery, we adapt the versatile framework of linear non-Gaussian acyclic models (LiNGAMs) to propose new algorithms to efficiently learn graphs that are polytrees.

Causal Discovery

Rewiring Networks for Graph Neural Network Training Using Discrete Geometry

no code implementations16 Jul 2022 Jakub Bober, Anthea Monod, Emil Saucan, Kevin N. Webster

Information over-squashing is a phenomenon of inefficient information propagation between distant nodes on networks.

Approximating Persistent Homology for Large Datasets

1 code implementation19 Apr 2022 Yueqi Cao, Anthea Monod

We show that the mean of the persistence diagrams of subsamples -- taken as a mean persistence measure computed from the subsamples -- is a valid approximation of the true persistent homology of the larger dataset.

Topological Data Analysis valid

Curved Markov Chain Monte Carlo for Network Learning

no code implementations7 Oct 2021 John Sigbeku, Emil Saucan, Anthea Monod

We present a geometrically enhanced Markov chain Monte Carlo sampler for networks based on a discrete curvature measure defined on graphs.

Topological Information Retrieval with Dilation-Invariant Bottleneck Comparative Measures

1 code implementation4 Apr 2021 Yueqi Cao, Athanasios Vlontzos, Luca Schmidtke, Bernhard Kainz, Anthea Monod

Appropriately representing elements in a database so that queries may be accurately matched is a central task in information retrieval; recently, this has been achieved by embedding the graphical structure of the database into a manifold in a hierarchy-preserving manner using a variety of metrics.

Information Retrieval Retrieval +1

Tropical Optimal Transport and Wasserstein Distances

1 code implementation13 Nov 2019 Wonjun Lee, Wuchen Li, Bo Lin, Anthea Monod

We study the problem of optimal transport in tropical geometry and define the Wasserstein-$p$ distances in the continuous metric measure space setting of the tropical projective torus.

Optimization and Control Metric Geometry Statistics Theory Statistics Theory

Functional Data Analysis using a Topological Summary Statistic: the Smooth Euler Characteristic Transform

2 code implementations21 Nov 2016 Lorin Crawford, Anthea Monod, Andrew X. Chen, Sayan Mukherjee, Raúl Rabadán

We introduce a novel statistic, the smooth Euler characteristic transform (SECT), which is designed to integrate shape information into regression models by representing shapes and surfaces as a collection of curves.

Applications

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