Search Results for author: Benjamin Berkels

Found 13 papers, 6 papers with code

Direct Motif Extraction from High Resolution Crystalline STEM Images

no code implementations13 Mar 2023 Amel Shamseldeen Ali Alhasan, Siyuan Zhang, Benjamin Berkels

The results are a representation of the motif in form of an image, atomic positions, primitive unit cell vectors, and a denoised and a modeled reconstruction of the input image.

Vocal Bursts Intensity Prediction

Automated Characterization of Catalytically Active Inclusion Body Production in Biotechnological Screening Systems

no code implementations30 Sep 2022 Karina Ruzaeva, Kira Küsters, Wolfgang Wiechert, Benjamin Berkels, Marco Oldiges, Katharina Nöh

To explore heterogeneity of CatIB development during the cultivation and track the size and quantity of CatIBs over time, a hybrid image processing pipeline approach was developed, which combines an ML-based detection of in-focus cells with model-based segmentation.

Cell Segmentation Segmentation

A distribution-dependent Mumford-Shah model for unsupervised hyperspectral image segmentation

1 code implementation28 Mar 2022 Jan-Christopher Cohrs, Chandrajit Bajaj, Benjamin Berkels

We equipped the MS functional with a novel robust distribution-dependent indicator function designed to handle the characteristic challenges of hyperspectral data.

Denoising Dimensionality Reduction +5

Automation of Hemocompatibility Analysis Using Image Segmentation and a Random Forest

no code implementations13 Oct 2020 Johanna C. Clauser, Judith Maas, Jutta Arens, Thomas Schmitz-Rode, Ulrich Steinseifer, Benjamin Berkels

We developed a new method for a fast, user-independent and reproducible analysis of material hemocompatibility tests, which is therefore a unique and powerful tool for advances in biomaterial research.

Image Segmentation Semantic Segmentation

Variational Multi-Phase Segmentation using High-Dimensional Local Features

1 code implementation26 Feb 2019 Niklas Mevenkamp, Benjamin Berkels

We propose a novel method for multi-phase segmentation of images based on high-dimensional local feature vectors.

Segmentation Vocal Bursts Intensity Prediction

Joint non-rigid image registration and reconstruction for quantitative atomic resolution scanning transmission electron microscopy

1 code implementation7 Jan 2019 Benjamin Berkels, Christian H. Liebscher

The bias-correction is responsible for the correction of the slow scan artifacts and based on a explicit coupling of the deformations of the individual images in a series via a minimization of the average deformation.

Applied Physics Image and Video Processing

A least-squares functional for joint exit wave reconstruction and image registration

1 code implementation30 Nov 2018 Christian Doberstein, Benjamin Berkels

We show that our objective functional is not convex with respect to the exit wave, which also carries over to the MAL and MIMAP functionals.

Numerical Analysis Numerical Analysis Functional Analysis

Mesh-to-raster based non-rigid registration of multi-modal images

no code implementations6 Mar 2017 Rosalia Tatano, Benjamin Berkels, Thomas M. Deserno

The registration is formulated as a minimization problem where the objective consists of a data term, which involves the signed distance function of the ROI from the reference image, and a higher order elastic regularizer for the deformation.

Optimized imaging using non-rigid registration

1 code implementation26 Mar 2014 Benjamin Berkels, Peter Binev, Douglas A. Blom, Wolfgang Dahmen, Robert C. Sharpley, Thomas Vogt

The extraordinary improvements of modern imaging devices offer access to data with unprecedented information content.

Cortical Surface Co-Registration based on MRI Images and Photos

no code implementations22 Mar 2013 Benjamin Berkels, Ivan Cabrilo, Sven Haller, Martin Rumpf, Carlo Schaller

Brain shift, i. e. the change in configuration of the brain after opening the dura mater, is a key problem in neuronavigation.

General Classification Robust classification

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