Search Results for author: Borjan Gagoski

Found 6 papers, 3 papers with code

SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRI

1 code implementation21 Dec 2023 Benjamin Billot, Neel Dey, Daniel Moyer, Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, Ellen Grant, Polina Golland

Here we propose EquiTrack, the first method that uses recent steerable SE(3)-equivariant CNNs (E-CNN) for motion tracking.

Time Series

Zero-DeepSub: Zero-Shot Deep Subspace Reconstruction for Rapid Multiparametric Quantitative MRI Using 3D-QALAS

1 code implementation4 Jul 2023 Yohan Jun, Yamin Arefeen, Jaejin Cho, Shohei Fujita, Xiaoqing Wang, P. Ellen Grant, Borjan Gagoski, Camilo Jaimes, Michael S. Gee, Berkin Bilgic

Using an ISMRM/NIST system phantom, the accuracy and reproducibility of the T1 and T2 maps estimated using the proposed methods were evaluated by comparing them with reference techniques.

SSL-QALAS: Self-Supervised Learning for Rapid Multiparameter Estimation in Quantitative MRI Using 3D-QALAS

no code implementations28 Feb 2023 Yohan Jun, Jaejin Cho, Xiaoqing Wang, Michael Gee, P. Ellen Grant, Berkin Bilgic, Borjan Gagoski

Conclusion: The proposed SSL-QALAS method enabled rapid reconstruction of multiparametric maps from 3D-QALAS measurements without an external dictionary or labeled ground-truth training data.

Self-Supervised Learning Transfer Learning

Wave-Encoded Model-based Deep Learning for Highly Accelerated Imaging with Joint Reconstruction

1 code implementation6 Feb 2022 Jaejin Cho, Borjan Gagoski, Taehyung Kim, Qiyuan Tian, Stephen Robert Frost, Itthi Chatnuntawech, Berkin Bilgic

Purpose: To propose a wave-encoded model-based deep learning (wave-MoDL) strategy for highly accelerated 3D imaging and joint multi-contrast image reconstruction, and further extend this to enable rapid quantitative imaging using an interleaved look-locker acquisition sequence with T2 preparation pulse (3D-QALAS).

Image Reconstruction

Rapid head-pose detection for automated slice prescription of fetal-brain MRI

no code implementations8 Oct 2021 Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, Leah Morgan, Paul Wighton, M. Dylan Tisdall, Martin Reuter, Elfar Adalsteinsson, P. Ellen Grant, Lawrence L. Wald, André J. W. van der Kouwe

In fetal-brain MRI, head-pose changes between prescription and acquisition present a challenge to obtaining the standard sagittal, coronal and axial views essential to clinical assessment.

Semi-Supervised Learning for Fetal Brain MRI Quality Assessment with ROI consistency

no code implementations23 Jun 2020 Junshen Xu, Sayeri Lala, Borjan Gagoski, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson

The proposed method is also implemented and evaluated on an MR scanner, which demonstrates the feasibility of online image quality assessment and image reacquisition during fetal MR scans.

Image Quality Assessment

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