no code implementations • 17 Jun 2020 • Shaoqing Yuan, Parminder Bhatia, Busra Celikkaya, Haiyang Liu, Kyunghwan Choi
Medication name inference is the task of mapping user friendly medication names from a free-form text to a concept in a normalized medication list.
no code implementations • 21 Nov 2019 • Ming Zhu, Busra Celikkaya, Parminder Bhatia, Chandan K. Reddy
This is of significant importance in the biomedical domain, where it could be used to semantically annotate a large volume of clinical records and biomedical literature, to standardized concepts described in an ontology such as Unified Medical Language System (UMLS).
no code implementations • 15 Oct 2019 • Parminder Bhatia, Busra Celikkaya, Mohammed Khalilia, Selvan Senthivel
Comprehend Medical is a stateless and Health Insurance Portability and Accountability Act (HIPAA) eligible Named Entity Recognition (NER) and Relationship Extraction (RE) service launched under Amazon Web Services (AWS) trained using state-of-the-art deep learning models.
no code implementations • 13 Dec 2018 • Parminder Bhatia, Kristjan Arumae, Busra Celikkaya
We complement a standard hierarchical NER model with a general transfer learning framework consisting of parameter sharing between the source and target tasks, and showcase scores significantly above the baseline architecture.
no code implementations • ACL 2019 • Parminder Bhatia, Busra Celikkaya, Mohammed Khalilia
Most of the existing systems treat this task as a pipeline of two separate tasks, i. e., named entity recognition (NER) and rule-based negation detection.
no code implementations • 29 Nov 2018 • Mengqi Jin, Mohammad Taha Bahadori, Aaron Colak, Parminder Bhatia, Busra Celikkaya, Ram Bhakta, Selvan Senthivel, Mohammed Khalilia, Daniel Navarro, Borui Zhang, Tiberiu Doman, Arun Ravi, Matthieu Liger, Taha Kass-Hout
Clinical text provides essential information to estimate the acuity of a patient during hospital stays in addition to structured clinical data.