Search Results for author: Byunghan Lee

Found 12 papers, 6 papers with code

Towards a Rigorous Evaluation of Time-series Anomaly Detection

1 code implementation11 Sep 2021 Siwon Kim, Kukjin Choi, Hyun-Soo Choi, Byunghan Lee, Sungroh Yoon

Furthermore, we question the potential of existing TAD methods by showing that an untrained model obtains comparable detection performance to the existing methods even when PA is forbidden.

Anomaly Detection Time Series +1

TargetNet: Functional microRNA Target Prediction with Deep Neural Networks

1 code implementation23 Jul 2021 Seonwoo Min, Byunghan Lee, Sungroh Yoon

Results: In this paper, we introduce TargetNet, a novel deep learning-based algorithm for functional miRNA target prediction.

Flexible dual-branched message passing neural network for quantum mechanical property prediction with molecular conformation

no code implementations14 Jun 2021 Jeonghee Jo, Bumju Kwak, Byunghan Lee, Sungroh Yoon

Message passing neural network provides an effective framework for capturing molecular geometric features with the perspective of a molecule as a graph.

Molecular Property Prediction Property Prediction

Pre-Training of Deep Bidirectional Protein Sequence Representations with Structural Information

1 code implementation25 Nov 2019 Seonwoo Min, Seunghyun Park, Siwon Kim, Hyun-Soo Choi, Byunghan Lee, Sungroh Yoon

Bridging the exponentially growing gap between the numbers of unlabeled and labeled protein sequences, several studies adopted semi-supervised learning for protein sequence modeling.

Ranked #17 on Only Connect Walls Dataset Task 1 (Grouping) on OCW (using extra training data)

Language Modelling Masked Language Modeling +1

DNA Steganalysis Using Deep Recurrent Neural Networks

no code implementations27 Apr 2017 Ho Bae, Byunghan Lee, Sunyoung Kwon, Sungroh Yoon

We compare our proposed method to various existing methods and biological sequence analysis methods implemented on top of our framework.

Steganalysis

Neural Universal Discrete Denoiser

no code implementations NeurIPS 2016 Taesup Moon, Seonwoo Min, Byunghan Lee, Sungroh Yoon

We present a new framework of applying deep neural networks (DNN) to devise a universal discrete denoiser.

Denoising

deepTarget: End-to-end Learning Framework for microRNA Target Prediction using Deep Recurrent Neural Networks

1 code implementation30 Mar 2016 Byunghan Lee, Junghwan Baek, Seunghyun Park, Sungroh Yoon

MicroRNAs (miRNAs) are short sequences of ribonucleic acids that control the expression of target messenger RNAs (mRNAs) by binding them.

Deep Learning in Bioinformatics

no code implementations21 Mar 2016 Seonwoo Min, Byunghan Lee, Sungroh Yoon

In the era of big data, transformation of biomedical big data into valuable knowledge has been one of the most important challenges in bioinformatics.

DNA-Level Splice Junction Prediction using Deep Recurrent Neural Networks

no code implementations16 Dec 2015 Byunghan Lee, Taehoon Lee, Byunggook Na, Sungroh Yoon

A eukaryotic gene consists of multiple exons (protein coding regions) and introns (non-coding regions), and a splice junction refers to the boundary between a pair of exon and intron.

NASCUP: Nucleic Acid Sequence Classification by Universal Probability

1 code implementation16 Nov 2015 Sunyoung Kwon, Gyuwan Kim, Byunghan Lee, Jongsik Chun, Sungroh Yoon, Young-Han Kim

Motivated by the need for fast and accurate classification of unlabeled nucleotide sequences on a large scale, we developed NASCUP, a new classification method that captures statistical structures of nucleotide sequences by compact context-tree models and universal probability from information theory.

Genomics Information Theory Information Theory

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