1 code implementation • 11 Sep 2021 • Siwon Kim, Kukjin Choi, Hyun-Soo Choi, Byunghan Lee, Sungroh Yoon
Furthermore, we question the potential of existing TAD methods by showing that an untrained model obtains comparable detection performance to the existing methods even when PA is forbidden.
1 code implementation • 23 Jul 2021 • Seonwoo Min, Byunghan Lee, Sungroh Yoon
Results: In this paper, we introduce TargetNet, a novel deep learning-based algorithm for functional miRNA target prediction.
1 code implementation • 29 Jun 2021 • Bumju Kwak, Jiwon Park, Taewon Kang, Jeonghee Jo, Byunghan Lee, Sungroh Yoon
In recent years, molecular representation learning has emerged as a key area of focus in various chemical tasks.
no code implementations • 14 Jun 2021 • Jeonghee Jo, Bumju Kwak, Byunghan Lee, Sungroh Yoon
Message passing neural network provides an effective framework for capturing molecular geometric features with the perspective of a molecule as a graph.
1 code implementation • 25 Nov 2019 • Seonwoo Min, Seunghyun Park, Siwon Kim, Hyun-Soo Choi, Byunghan Lee, Sungroh Yoon
Bridging the exponentially growing gap between the numbers of unlabeled and labeled protein sequences, several studies adopted semi-supervised learning for protein sequence modeling.
Ranked #17 on Only Connect Walls Dataset Task 1 (Grouping) on OCW (using extra training data)
no code implementations • 16 Apr 2018 • Jaekoo Lee, Byunghan Lee, Jongyoon Song, Jaesik Yoon, Yongsik Lee, Dong-hun Lee, Sungroh Yoon
The experimental results with real-world data confirm the effectiveness of the system and models.
no code implementations • 27 Apr 2017 • Ho Bae, Byunghan Lee, Sunyoung Kwon, Sungroh Yoon
We compare our proposed method to various existing methods and biological sequence analysis methods implemented on top of our framework.
no code implementations • NeurIPS 2016 • Taesup Moon, Seonwoo Min, Byunghan Lee, Sungroh Yoon
We present a new framework of applying deep neural networks (DNN) to devise a universal discrete denoiser.
1 code implementation • 30 Mar 2016 • Byunghan Lee, Junghwan Baek, Seunghyun Park, Sungroh Yoon
MicroRNAs (miRNAs) are short sequences of ribonucleic acids that control the expression of target messenger RNAs (mRNAs) by binding them.
no code implementations • 21 Mar 2016 • Seonwoo Min, Byunghan Lee, Sungroh Yoon
In the era of big data, transformation of biomedical big data into valuable knowledge has been one of the most important challenges in bioinformatics.
no code implementations • 16 Dec 2015 • Byunghan Lee, Taehoon Lee, Byunggook Na, Sungroh Yoon
A eukaryotic gene consists of multiple exons (protein coding regions) and introns (non-coding regions), and a splice junction refers to the boundary between a pair of exon and intron.
1 code implementation • 16 Nov 2015 • Sunyoung Kwon, Gyuwan Kim, Byunghan Lee, Jongsik Chun, Sungroh Yoon, Young-Han Kim
Motivated by the need for fast and accurate classification of unlabeled nucleotide sequences on a large scale, we developed NASCUP, a new classification method that captures statistical structures of nucleotide sequences by compact context-tree models and universal probability from information theory.
Genomics Information Theory Information Theory