GenSpectrum Chat: Data Exploration in Public Health Using Large Language Models

no code implementations • 23 May 2023 • Chaoran Chen, Tanja Stadler

We also tested the chatbot with inputs from 10 different languages, and despite being provided solely with English instructions and examples, it successfully processed prompts in all tested languages.

Chatbot Language Modelling +1

LAPIS is a fast web API for massive open virus sequencing databases

1 code implementation • 2 Jun 2022 • Chaoran Chen, Alexander Taepper, Fabian Engelniederhammer, Jonas Kellerer, Cornelius Roemer, Tanja Stadler

Conclusions: Powered by an optimized database engine and available through a web API, LAPIS enhances the accessibility of genomic sequencing data.

Epidemiology Retrieval

CoV-Spectrum: Analysis of globally shared SARS-CoV-2 data to Identify and Characterize New Variants

1 code implementation • 15 Jun 2021 • Chaoran Chen, Sarah Nadeau, Michael Yared, Philippe Voinov, Ning Xie, Cornelius Roemer, Tanja Stadler

Summary: The CoV-Spectrum website supports the identification of new SARS-CoV-2 variants of concern and the tracking of known variants.