Search Results for author: Chengliang Dai

Found 11 papers, 3 papers with code

Suggestive Annotation of Brain MR Images with Gradient-guided Sampling

no code implementations2 Jun 2022 Chengliang Dai, Shuo Wang, Yuanhan Mo, Elsa Angelini, Yike Guo, Wenjia Bai

We evaluate the framework on two different brain image analysis tasks, namely brain tumour segmentation and whole brain segmentation.

Brain Segmentation Image Segmentation +2

QU-BraTS: MICCAI BraTS 2020 Challenge on Quantifying Uncertainty in Brain Tumor Segmentation - Analysis of Ranking Scores and Benchmarking Results

1 code implementation19 Dec 2021 Raghav Mehta, Angelos Filos, Ujjwal Baid, Chiharu Sako, Richard McKinley, Michael Rebsamen, Katrin Datwyler, Raphael Meier, Piotr Radojewski, Gowtham Krishnan Murugesan, Sahil Nalawade, Chandan Ganesh, Ben Wagner, Fang F. Yu, Baowei Fei, Ananth J. Madhuranthakam, Joseph A. Maldjian, Laura Daza, Catalina Gomez, Pablo Arbelaez, Chengliang Dai, Shuo Wang, Hadrien Reynaud, Yuan-han Mo, Elsa Angelini, Yike Guo, Wenjia Bai, Subhashis Banerjee, Lin-min Pei, Murat AK, Sarahi Rosas-Gonzalez, Ilyess Zemmoura, Clovis Tauber, Minh H. Vu, Tufve Nyholm, Tommy Lofstedt, Laura Mora Ballestar, Veronica Vilaplana, Hugh McHugh, Gonzalo Maso Talou, Alan Wang, Jay Patel, Ken Chang, Katharina Hoebel, Mishka Gidwani, Nishanth Arun, Sharut Gupta, Mehak Aggarwal, Praveer Singh, Elizabeth R. Gerstner, Jayashree Kalpathy-Cramer, Nicolas Boutry, Alexis Huard, Lasitha Vidyaratne, Md Monibor Rahman, Khan M. Iftekharuddin, Joseph Chazalon, Elodie Puybareau, Guillaume Tochon, Jun Ma, Mariano Cabezas, Xavier Llado, Arnau Oliver, Liliana Valencia, Sergi Valverde, Mehdi Amian, Mohammadreza Soltaninejad, Andriy Myronenko, Ali Hatamizadeh, Xue Feng, Quan Dou, Nicholas Tustison, Craig Meyer, Nisarg A. Shah, Sanjay Talbar, Marc-Andre Weber, Abhishek Mahajan, Andras Jakab, Roland Wiest, Hassan M. Fathallah-Shaykh, Arash Nazeri, Mikhail Milchenko1, Daniel Marcus, Aikaterini Kotrotsou, Rivka Colen, John Freymann, Justin Kirby, Christos Davatzikos, Bjoern Menze, Spyridon Bakas, Yarin Gal, Tal Arbel

In this study, we explore and evaluate a score developed during the BraTS 2019 and BraTS 2020 task on uncertainty quantification (QU-BraTS) and designed to assess and rank uncertainty estimates for brain tumor multi-compartment segmentation.

Benchmarking Brain Tumor Segmentation +5

Suggestive Annotation of Brain Tumour Images with Gradient-guided Sampling

no code implementations26 Jun 2020 Chengliang Dai, Shuo Wang, Yuanhan Mo, Kaichen Zhou, Elsa Angelini, Yike Guo, Wenjia Bai

Machine learning has been widely adopted for medical image analysis in recent years given its promising performance in image segmentation and classification tasks.

BIG-bench Machine Learning Image Segmentation +2

Deep Generative Model-based Quality Control for Cardiac MRI Segmentation

no code implementations23 Jun 2020 Shuo Wang, Giacomo Tarroni, Chen Qin, Yuanhan Mo, Chengliang Dai, Chen Chen, Ben Glocker, Yike Guo, Daniel Rueckert, Wenjia Bai

Our approach provides a real-time and model-agnostic quality control for cardiac MRI segmentation, which has the potential to be integrated into clinical image analysis workflows.

Image Segmentation MRI segmentation +2

Efficient Deep Representation Learning by Adaptive Latent Space Sampling

no code implementations19 Mar 2020 Yuanhan Mo, Shuo Wang, Chengliang Dai, Rui Zhou, Zhongzhao Teng, Wenjia Bai, Yike Guo

Supervised deep learning requires a large amount of training samples with annotations (e. g. label class for classification task, pixel- or voxel-wised label map for segmentation tasks), which are expensive and time-consuming to obtain.

General Classification Image Classification +2

Suggestive Labelling for Medical Image Analysis by Adaptive Latent Space Sampling

no code implementations MIDL 2019 Yuanhan Mo, Shuo Wang, Chengliang Dai, Zhongzhao Teng, Wenjia Bai, Yike Guo

Supervised deep learning for medical imaging analysis requires a large amount of training samples with annotations (e. g. label class for classification task, pixel- or voxel-wised label map for medical segmentation tasks), which are expensive and time-consuming to obtain.

Informativeness

Unsupervised Annotation of Phenotypic Abnormalities via Semantic Latent Representations on Electronic Health Records

1 code implementation10 Nov 2019 Jingqing Zhang, Xiao-Yu Zhang, Kai Sun, Xian Yang, Chengliang Dai, Yike Guo

The extraction of phenotype information which is naturally contained in electronic health records (EHRs) has been found to be useful in various clinical informatics applications such as disease diagnosis.

Computational Efficiency

Integrated Multi-omics Analysis Using Variational Autoencoders: Application to Pan-cancer Classification

4 code implementations17 Aug 2019 Xiao-Yu Zhang, Jingqing Zhang, Kai Sun, Xian Yang, Chengliang Dai, Yike Guo

The training procedure of OmiVAE is comprised of an unsupervised phase without the classifier and a supervised phase with the classifier.

Classification Decision Making +3

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