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Found 18 papers, 10 papers with code
The ACROBAT 2022 Challenge: Automatic Registration Of Breast Cancer Tissue
The alignment of tissue between histopathological whole-slide-images (WSI) is crucial for research and clinical applications.
Mitosis domain generalization in histopathology images -- The MIDOG challenge
The goal of the MICCAI MIDOG 2021 challenge has been to propose and evaluate methods that counter this domain shift and derive scanner-agnostic mitosis detection algorithms.
Pan-tumor CAnine cuTaneous Cancer Histology (CATCH) dataset
Due to morphological similarities, the differentiation of histologic sections of cutaneous tumors into individual subtypes can be challenging.
Superpixel Pre-Segmentation of HER2 Slides for Efficient Annotation
When evaluating the approaches on fully manually annotated images, we observe that the autoencoder-based superpixels achieve a 23% increase in boundary F1 score compared to the baseline SLIC superpixels.
First steps on Gamification of Lung Fluid Cells Annotations in the Flower Domain
Annotating data, especially in the medical domain, requires expert knowledge and a lot of effort.
Domain Adversarial RetinaNet as a Reference Algorithm for the MItosis DOmain Generalization Challenge
This work presents a mitotic figure detection algorithm developed as a baseline for the challenge, based on domain adversarial training.
Inter-Species Cell Detection: Datasets on pulmonary hemosiderophages in equine, human and feline specimens
Pulmonary hemorrhage (P-Hem) occurs among multiple species and can have various causes.
Robust quad-tree based registration of whole slide images
The registration of whole slide images (WSIs) provides the basis for many subsequent processing steps in digital pathology.
Learning to be EXACT, Cell Detection for Asthma on Partially Annotated Whole Slide Images
We evaluated our pipeline in a cross-validation setup with a fixed training set using a dataset of six equine WSIs of which four are partially annotated and used for training, and two fully annotated WSI are used for validation and testing.
Dataset on Bi- and Multi-Nucleated Tumor Cells in Canine Cutaneous Mast Cell Tumors
For this study, we created the first open source data-set with 19, 983 annotations of BiNC and 1, 416 annotations of MuNC in 32 histological whole slide images of ccMCT.
How Many Annotators Do We Need? -- A Study on the Influence of Inter-Observer Variability on the Reliability of Automatic Mitotic Figure Assessment
Density of mitotic figures in histologic sections is a prognostically relevant characteristic for many tumours.
A completely annotated whole slide image dataset of canine breast cancer to aid human breast cancer research
We achieved a mean F1-score of 0. 791 on the test set and of up to 0. 696 on a human breast cancer dataset.
Are pathologist-defined labels reproducible? Comparison of the TUPAC16 mitotic figure dataset with an alternative set of labels
To date, some datasets on mitotic figures are available and were used for development of promising deep learning-based algorithms.
EXACT: A collaboration toolset for algorithm-aided annotation of images with annotation version control
In many research areas, scientific progress is accelerated by multidisciplinary access to image data and their interdisciplinary annotation.
Are fast labeling methods reliable? A case study of computer-aided expert annotations on microscopy slides
However, a significant percentage of the deliberately introduced false labels was not identified by the experts.
Human-Computer Interaction Image and Video Processing
Learning New Tricks from Old Dogs -- Inter-Species, Inter-Tissue Domain Adaptation for Mitotic Figure Assessment
We were able to show that domain adversarial training considerably improves accuracy when applying mitotic figure classification learned from the canine on the human data sets (up to +12. 8% in accuracy) and is thus a helpful method to transfer knowledge from existing data sets to new tissue types and species.
Deep Learning-Based Quantification of Pulmonary Hemosiderophages in Cytology Slides
Additionally, we evaluated object detection methods on a novel data set of 17 completely annotated cytology whole slide images (WSI) containing 78, 047 hemosiderophages.
Deep learning algorithms out-perform veterinary pathologists in detecting the mitotically most active tumor region
Manual count of mitotic figures, which is determined in the tumor region with the highest mitotic activity, is a key parameter of most tumor grading schemes.
