Search Results for author: Corey S. O'Hern

Found 6 papers, 3 papers with code

Gradient-based Design of Computational Granular Crystals

no code implementations7 Apr 2024 Atoosa Parsa, Corey S. O'Hern, Rebecca Kramer-Bottiglio, Josh Bongard

There is growing interest in engineering unconventional computing devices that leverage the intrinsic dynamics of physical substrates to perform fast and energy-efficient computations.

Identifying topologically associating domains using differential kernels

no code implementations22 Dec 2023 Luka Maisuradze, Megan C. King, Ivan V. Surovtsev, Simon G. J. Mochrie, Mark D. Shattuck, Corey S. O'Hern

However, most TAD identification algorithms are unable to identify nested or overlapping TADs and for a given Hi-C map there is significant variation in the location and number of TADs identified by different methods.

Universal Mechanical Polycomputation in Granular Matter

1 code implementation29 May 2023 Atoosa Parsa, Sven Witthaus, Nidhi Pashine, Corey S. O'Hern, Rebecca Kramer-Bottiglio, Josh Bongard

Mechanical computers, wherein information processing is a material property emerging from the interaction of components with the environment, are one such class of devices.

Evolving Programmable Computational Metamaterials

1 code implementation19 Apr 2022 Atoosa Parsa, Dong Wang, Corey S. O'Hern, Mark D. Shattuck, Rebecca Kramer-Bottiglio, Josh Bongard

Granular metamaterials are a promising choice for the realization of mechanical computing devices.

Core packing of well-defined x-ray and NMR structures is the same

no code implementations12 Mar 2022 Alex T. Grigas, Zhuoyi Liu, Lynne Regan, Corey S. O'Hern

Numerous studies have investigated the differences and similarities between protein structures determined by solution NMR spectroscopy and those determined by x-ray crystallography.

Using physical features of protein core packing to distinguish real proteins from decoys

1 code implementation5 Jan 2020 Alex T. Grigas, Zhe Mei, John D. Treado, Zachary A. Levine, Lynne Regan, Corey S. O'Hern

One route to distinguish real protein structures from decoys is to delineate the important physical features that specify a real protein.

Biomolecules Soft Condensed Matter

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