Search Results for author: David B. Dunson

Found 55 papers, 15 papers with code

Logistic-beta processes for modeling dependent random probabilities with beta marginals

1 code implementation10 Feb 2024 Changwoo J. Lee, Alessandro Zito, Huiyan Sang, David B. Dunson

The beta distribution serves as a canonical tool for modeling probabilities and is extensively used in statistics and machine learning, especially in the field of Bayesian nonparametrics.

regression

Bayesian Transfer Learning

no code implementations20 Dec 2023 Piotr M. Suder, Jason Xu, David B. Dunson

Transfer learning is a burgeoning concept in statistical machine learning that seeks to improve inference and/or predictive accuracy on a domain of interest by leveraging data from related domains.

Electrical Engineering Transfer Learning

Proximal Algorithms for Accelerated Langevin Dynamics

no code implementations24 Nov 2023 Duy H. Thai, Alexander L. Young, David B. Dunson

We develop a novel class of MCMC algorithms based on a stochastized Nesterov scheme.

Sequential Gibbs Posteriors with Applications to Principal Component Analysis

no code implementations19 Oct 2023 Steven Winter, Omar Melikechi, David B. Dunson

Gibbs posteriors are proportional to a prior distribution multiplied by an exponentiated loss function, with a key tuning parameter weighting information in the loss relative to the prior and providing a control of posterior uncertainty.

Bayesian Inference Uncertainty Quantification

Machine Learning and the Future of Bayesian Computation

no code implementations21 Apr 2023 Steven Winter, Trevor Campbell, Lizhen Lin, Sanvesh Srivastava, David B. Dunson

Bayesian models are a powerful tool for studying complex data, allowing the analyst to encode rich hierarchical dependencies and leverage prior information.

Bayesian Inference Variational Inference

Ellipsoid fitting with the Cayley transform

2 code implementations20 Apr 2023 Omar Melikechi, David B. Dunson

We introduce Cayley transform ellipsoid fitting (CTEF), an algorithm that uses the Cayley transform to fit ellipsoids to noisy data in any dimension.

Clustering Data Visualization +1

Covariate-informed latent interaction models: Addressing geographic & taxonomic bias in predicting bird-plant interactions

no code implementations9 Mar 2021 Georgia Papadogeorgou, Carolina Bello, Otso Ovaskainen, David B. Dunson

Reductions in natural habitats urge that we better understand species' interconnection and how biological communities respond to environmental changes.

Methodology

Accelerated Algorithms for Convex and Non-Convex Optimization on Manifolds

no code implementations18 Oct 2020 Lizhen Lin, Bayan Saparbayeva, Michael Minyi Zhang, David B. Dunson

One of the key challenges for optimization on manifolds is the difficulty of verifying the complexity of the objective function, e. g., whether the objective function is convex or non-convex, and the degree of non-convexity.

Extended Stochastic Block Models with Application to Criminal Networks

1 code implementation16 Jul 2020 Sirio Legramanti, Tommaso Rigon, Daniele Durante, David B. Dunson

The coexistence of these noisy block patterns limits the reliability of routinely-used community detection algorithms, and requires extensions of model-based solutions to realistically characterize the node partition process, incorporate information from node attributes, and provide improved strategies for estimation and uncertainty quantification.

Community Detection Model Selection +1

A generalized Bayes framework for probabilistic clustering

no code implementations9 Jun 2020 Tommaso Rigon, Amy H. Herring, David B. Dunson

Several existing clustering algorithms, including k-means, can be interpreted as generalized Bayes estimators under our framework, and hence we provide a method of uncertainty quantification for these approaches.

Clustering Uncertainty Quantification

Classification Trees for Imbalanced and Sparse Data: Surface-to-Volume Regularization

no code implementations26 Apr 2020 Yichen Zhu, Cheng Li, David B. Dunson

When data are limited in one or more of the classes, the estimated decision boundaries are often irregularly shaped due to the limited sample size, leading to poor generalization error.

General Classification

Composite mixture of log-linear models for categorical data

no code implementations3 Apr 2020 Emanuele Aliverti, David B. Dunson

Multivariate categorical data are routinely collected in many application areas.

Methodology

Nearest Neighbor Dirichlet Mixtures

1 code implementation17 Mar 2020 Shounak Chattopadhyay, Antik Chakraborty, David B. Dunson

There is a rich literature on Bayesian methods for density estimation, which characterize the unknown density as a mixture of kernels.

Density Estimation Uncertainty Quantification

Domain Adaptive Bootstrap Aggregating

no code implementations12 Jan 2020 Meimei Liu, David B. Dunson

When there is a distributional shift between data used to train a predictive algorithm and current data, performance can suffer.

Domain Adaptation Medical Diagnosis

Auto-encoding brain networks with applications to analyzing large-scale brain imaging datasets

no code implementations7 Nov 2019 Meimei Liu, Zhengwu Zhang, David B. Dunson

In this paper, building on recent advances in deep learning, we develop a nonlinear latent factor model to characterize the population distribution of brain graphs and infer the relationships between brain structural connectomes and human traits.

Dimensionality Reduction

Identifying main effects and interactions among exposures using Gaussian processes

1 code implementation5 Nov 2019 Federico Ferrari, David B. Dunson

Our interest is in model selection for these different components, accounting for uncertainty and addressing non-identifability between the linear and nonparametric components of the semiparametric model.

Applications

Perturbed factor analysis: Improving generalizability across studies

1 code implementation7 Oct 2019 Arkaprava Roy, Isaac Lavine, Amy H. Herring, David B. Dunson

As an alternative, we propose a class of Perturbed Factor Analysis (PFA) models that assume a common factor structure across studies after perturbing the data via multiplication by a study-specific matrix.

Methodology

Approximating posteriors with high-dimensional nuisance parameters via integrated rotated Gaussian approximation

1 code implementation15 Sep 2019 Willem van den Boom, Galen Reeves, David B. Dunson

Posterior computation for high-dimensional data with many parameters can be challenging.

Computation Methodology

Geodesic Distance Estimation with Spherelets

no code implementations29 Jun 2019 Didong Li, David B. Dunson

When the manifold is unknown, it is challenging to accurately approximate the geodesic distance.

Clustering Density Estimation

Bayesian Factor Analysis for Inference on Interactions

no code implementations25 Apr 2019 Federico Ferrari, David B. Dunson

This article is motivated by the problem of inference on interactions among chemical exposures impacting human health outcomes.

Methodology Applications

Lipschitz Bandit Optimization with Improved Efficiency

no code implementations25 Apr 2019 Xu Zhu, David B. Dunson

We consider the Lipschitz bandit optimization problem with an emphasis on practical efficiency.

Classification via local manifold approximation

1 code implementation3 Mar 2019 Didong Li, David B. Dunson

It is challenging to obtain accurate classification performance when the feature distributions in the different classes are complex, with nonlinear, overlapping and intersecting supports.

Classification General Classification +1

Bayesian cumulative shrinkage for infinite factorizations

1 code implementation12 Feb 2019 Sirio Legramanti, Daniele Durante, David B. Dunson

There is a wide variety of models in which the dimension of the parameter space is unknown.

Methodology

Supervised Multiscale Dimension Reduction for Spatial Interaction Networks

no code implementations1 Jan 2019 Shaobo Han, David B. Dunson

We introduce a multiscale supervised dimension reduction method for SPatial Interaction Network (SPIN) data, which consist of a collection of spatially coordinated interactions.

Dimensionality Reduction

Bayesian Distance Clustering

no code implementations19 Oct 2018 Leo L. Duan, David B. Dunson

Model-based clustering is widely-used in a variety of application areas.

Clustering

Bayesian Modular and Multiscale Regression

1 code implementation16 Sep 2018 Michele Peruzzi, David B. Dunson

We tackle the problem of multiscale regression for predictors that are spatially or temporally indexed, or with a pre-specified multiscale structure, with a Bayesian modular approach.

Methodology

Multiresolution Tensor Decomposition for Multiple Spatial Passing Networks

no code implementations3 Mar 2018 Shaobo Han, David B. Dunson

This article is motivated by soccer positional passing networks collected across multiple games.

Tensor Decomposition

Bayesian Multi Plate High Throughput Screening of Compounds

no code implementations28 Sep 2017 Ivo D. Shterev, David B. Dunson, Cliburn Chan, Gregory D. Sempowski

High throughput screening of compounds (chemicals) is an essential part of drug discovery [7], involving thousands to millions of compounds, with the purpose of identifying candidate hits.

Drug Discovery Specificity +1

Efficient Manifold and Subspace Approximations with Spherelets

3 code implementations26 Jun 2017 Didong Li, Minerva Mukhopadhyay, David B. Dunson

There is a rich literature on approximating the unknown manifold, and on exploiting such approximations in clustering, data compression, and prediction.

Clustering Data Compression +2

Boosting Variational Inference

no code implementations17 Nov 2016 Fangjian Guo, Xiangyu Wang, Kai Fan, Tamara Broderick, David B. Dunson

Variational inference (VI) provides fast approximations of a Bayesian posterior in part because it formulates posterior approximation as an optimization problem: to find the closest distribution to the exact posterior over some family of distributions.

Variational Inference

Fast moment estimation for generalized latent Dirichlet models

no code implementations17 Mar 2016 Shiwen Zhao, Barbara E. Engelhardt, Sayan Mukherjee, David B. Dunson

We illustrate the utility of our approach on simulated data, comparing results from MELD to alternative methods, and we show the promise of our approach through the application of MELD to several data sets.

Variational Inference

Variational Gaussian Copula Inference

1 code implementation19 Jun 2015 Shaobo Han, Xuejun Liao, David B. Dunson, Lawrence Carin

We utilize copulas to constitute a unified framework for constructing and optimizing variational proposals in hierarchical Bayesian models.

Probabilistic Curve Learning: Coulomb Repulsion and the Electrostatic Gaussian Process

no code implementations NeurIPS 2015 Ye Wang, David B. Dunson

Learning of low dimensional structure in multidimensional data is a canonical problem in machine learning.

Parallelizing MCMC with Random Partition Trees

2 code implementations NeurIPS 2015 Xiangyu Wang, Fangjian Guo, Katherine A. Heller, David B. Dunson

The new algorithm applies random partition trees to combine the subset posterior draws, which is distribution-free, easy to resample from and can adapt to multiple scales.

Bayesian Inference

Locally Adaptive Dynamic Networks

no code implementations21 May 2015 Daniele Durante, David B. Dunson

Our focus is on realistically modeling and forecasting dynamic networks of face-to-face contacts among individuals.

Data Augmentation Position

Exploiting Big Data in Logistics Risk Assessment via Bayesian Nonparametrics

no code implementations21 Jan 2015 Yan Shang, David B. Dunson, Jing-Sheng Song

In cargo logistics, a key performance measure is transport risk, defined as the deviation of the actual arrival time from the planned arrival time.

Compressed Gaussian Process

no code implementations7 Jun 2014 Rajarshi Guhaniyogi, David B. Dunson

Nonparametric regression for massive numbers of samples (n) and features (p) is an increasingly important problem.

regression

Robust and Scalable Bayes via a Median of Subset Posterior Measures

no code implementations11 Mar 2014 Stanislav Minsker, Sanvesh Srivastava, Lizhen Lin, David B. Dunson

We propose a novel approach to Bayesian analysis that is provably robust to outliers in the data and often has computational advantages over standard methods.

Minimax Optimal Bayesian Aggregation

no code implementations6 Mar 2014 Yun Yang, David B. Dunson

It is generally believed that ensemble approaches, which combine multiple algorithms or models, can outperform any single algorithm at machine learning tasks, such as prediction.

Bayesian Conditional Density Filtering

1 code implementation15 Jan 2014 Shaan Qamar, Rajarshi Guhaniyogi, David B. Dunson

We propose a Conditional Density Filtering (C-DF) algorithm for efficient online Bayesian inference.

Bayesian Inference

Parallelizing MCMC via Weierstrass Sampler

1 code implementation17 Dec 2013 Xiangyu Wang, David B. Dunson

With the rapidly growing scales of statistical problems, subset based communication-free parallel MCMC methods are a promising future for large scale Bayesian analysis.

Computational Efficiency

Locally Adaptive Bayesian Multivariate Time Series

no code implementations NeurIPS 2013 Daniele Durante, Bruno Scarpa, David B. Dunson

In modeling multivariate time series, it is important to allow time-varying smoothness in the mean and covariance process.

Bayesian Inference Time Series +1

Nonparametric Bayes dynamic modeling of relational data

no code implementations19 Nov 2013 Daniele Durante, David B. Dunson

Symmetric binary matrices representing relations among entities are commonly collected in many areas.

Data Augmentation Gaussian Processes

Learning Densities Conditional on Many Interacting Features

no code implementations26 Apr 2013 David C. Kessler, Jack Taylor, David B. Dunson

Learning a distribution conditional on a set of discrete-valued features is a commonly encountered task.

Dimensionality Reduction feature selection

Bayesian Compressed Regression

no code implementations4 Mar 2013 Rajarshi Guhaniyogi, David B. Dunson

As an alternative to variable selection or shrinkage in high dimensional regression, we propose to randomly compress the predictors prior to analysis.

Dimensionality Reduction regression +1

Multiresolution Gaussian Processes

no code implementations NeurIPS 2012 Emily Fox, David B. Dunson

We propose a multiresolution Gaussian process to capture long-range, non-Markovian dependencies while allowing for abrupt changes.

Gaussian Processes

Repulsive Mixtures

no code implementations NeurIPS 2012 Francesca Petralia, Vinayak Rao, David B. Dunson

One important issue that arises in using discrete mixtures is low separation in the components; in particular, different components can be introduced that are very similar and hence redundant.

Multi-Task Learning

Locally adaptive factor processes for multivariate time series

no code implementations7 Oct 2012 Daniele Durante, Bruno Scarpa, David B. Dunson

In modeling multivariate time series, it is important to allow time-varying smoothness in the mean and covariance process.

Bayesian Inference Gaussian Processes +2

Generalized Beta Mixtures of Gaussians

no code implementations NeurIPS 2011 Artin Armagan, Merlise Clyde, David B. Dunson

In recent years, a rich variety of shrinkage priors have been proposed that have great promise in addressing massive regression problems.

regression

Hierarchical Topic Modeling for Analysis of Time-Evolving Personal Choices

no code implementations NeurIPS 2011 Xianxing Zhang, Lawrence Carin, David B. Dunson

The nested Chinese restaurant process is extended to design a nonparametric topic-model tree for representation of human choices.

The Kernel Beta Process

no code implementations NeurIPS 2011 Lu Ren, Yingjian Wang, Lawrence Carin, David B. Dunson

A new Le ́vy process prior is proposed for an uncountable collection of covariate- dependent feature-learning measures; the model is called the kernel beta process (KBP).

Joint Analysis of Time-Evolving Binary Matrices and Associated Documents

no code implementations NeurIPS 2010 Eric Wang, Dehong Liu, Jorge Silva, Lawrence Carin, David B. Dunson

An objective of such analysis is to infer structure and inter-relationships underlying the matrices, here defined by latent features associated with each axis of the matrix.

A Bayesian Model for Simultaneous Image Clustering, Annotation and Object Segmentation

no code implementations NeurIPS 2009 Lan Du, Lu Ren, Lawrence Carin, David B. Dunson

The model clusters the images into classes, and each image is segmented into a set of objects, also allowing the opportunity to assign a word to each object (localized labeling).

Clustering Image Clustering +2

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