Search Results for author: Dennis Shasha

Found 7 papers, 4 papers with code

On the calibration of compartmental epidemiological models

1 code implementation9 Dec 2023 Nikunj Gupta, Anh Mai, Azza Abouzied, Dennis Shasha

Finally, we discuss how the calibration of parameters of epidemiological compartmental models is an emerging field that has the potential to improve the accuracy of disease modeling and public health decision-making.

Decision Making Reinforcement Learning (RL)

Planning Multiple Epidemic Interventions with Reinforcement Learning

1 code implementation30 Jan 2023 Anh Mai, Nikunj Gupta, Azza Abouzied, Dennis Shasha

We illustrate how to effectively apply state-of-the-art actor-critic reinforcement learning algorithms (PPO and SAC) to search for plans that minimize overall costs.

reinforcement-learning Reinforcement Learning (RL)

Forgetful Forests: high performance learning data structures for streaming data under concept drift

no code implementations15 Dec 2022 Zhehu Yuan, Yinqi Sun, Dennis Shasha

The forgetful algorithms described in this paper achieve high time performance while maintaining high quality predictions on streaming data.

Classification Under Ambiguity: When Is Average-K Better Than Top-K?

no code implementations16 Dec 2021 Titouan Lorieul, Alexis Joly, Dennis Shasha

This paper formally characterizes the ambiguity profile when average-$K$ classification can achieve a lower error rate than a fixed top-$K$ classification.

Classification

Robotic Room Traversal using Optical Range Finding

no code implementations17 Apr 2020 Cole Smith, Eric Lin, Dennis Shasha

Our room traversal algorithm relies upon the approximate distance from the robot to the nearest obstacle in 360 degrees.

Debugging Machine Learning Pipelines

1 code implementation11 Feb 2020 Raoni Lourenço, Juliana Freire, Dennis Shasha

Machine learning tasks entail the use of complex computational pipelines to reach quantitative and qualitative conclusions.

BIG-bench Machine Learning

An expanded evaluation of protein function prediction methods shows an improvement in accuracy

1 code implementation3 Jan 2016 Yuxiang Jiang, Tal Ronnen Oron, Wyatt T Clark, Asma R Bankapur, Daniel D'Andrea, Rosalba Lepore, Christopher S Funk, Indika Kahanda, Karin M Verspoor, Asa Ben-Hur, Emily Koo, Duncan Penfold-Brown, Dennis Shasha, Noah Youngs, Richard Bonneau, Alexandra Lin, Sayed ME Sahraeian, Pier Luigi Martelli, Giuseppe Profiti, Rita Casadio, Renzhi Cao, Zhaolong Zhong, Jianlin Cheng, Adrian Altenhoff, Nives Skunca, Christophe Dessimoz, Tunca Dogan, Kai Hakala, Suwisa Kaewphan, Farrokh Mehryary, Tapio Salakoski, Filip Ginter, Hai Fang, Ben Smithers, Matt Oates, Julian Gough, Petri Törönen, Patrik Koskinen, Liisa Holm, Ching-Tai Chen, Wen-Lian Hsu, Kevin Bryson, Domenico Cozzetto, Federico Minneci, David T Jones, Samuel Chapman, Dukka B K. C., Ishita K Khan, Daisuke Kihara, Dan Ofer, Nadav Rappoport, Amos Stern, Elena Cibrian-Uhalte, Paul Denny, Rebecca E Foulger, Reija Hieta, Duncan Legge, Ruth C Lovering, Michele Magrane, Anna N Melidoni, Prudence Mutowo-Meullenet, Klemens Pichler, Aleksandra Shypitsyna, Biao Li, Pooya Zakeri, Sarah ElShal, Léon-Charles Tranchevent, Sayoni Das, Natalie L Dawson, David Lee, Jonathan G Lees, Ian Sillitoe, Prajwal Bhat, Tamás Nepusz, Alfonso E Romero, Rajkumar Sasidharan, Haixuan Yang, Alberto Paccanaro, Jesse Gillis, Adriana E Sedeño-Cortés, Paul Pavlidis, Shou Feng, Juan M Cejuela, Tatyana Goldberg, Tobias Hamp, Lothar Richter, Asaf Salamov, Toni Gabaldon, Marina Marcet-Houben, Fran Supek, Qingtian Gong, Wei Ning, Yuanpeng Zhou, Weidong Tian, Marco Falda, Paolo Fontana, Enrico Lavezzo, Stefano Toppo, Carlo Ferrari, Manuel Giollo, Damiano Piovesan, Silvio Tosatto, Angela del Pozo, José M Fernández, Paolo Maietta, Alfonso Valencia, Michael L Tress, Alfredo Benso, Stefano Di Carlo, Gianfranco Politano, Alessandro Savino, Hafeez Ur Rehman, Matteo Re, Marco Mesiti, Giorgio Valentini, Joachim W Bargsten, Aalt DJ van Dijk, Branislava Gemovic, Sanja Glisic, Vladmir Perovic, Veljko Veljkovic, Nevena Veljkovic, Danillo C Almeida-e-Silva, Ricardo ZN Vencio, Malvika Sharan, Jörg Vogel, Lakesh Kansakar, Shanshan Zhang, Slobodan Vucetic, Zheng Wang, Michael JE Sternberg, Mark N Wass, Rachael P Huntley, Maria J Martin, Claire O'Donovan, Peter N. Robinson, Yves Moreau, Anna Tramontano, Patricia C Babbitt, Steven E Brenner, Michal Linial, Christine A Orengo, Burkhard Rost, Casey S Greene, Sean D Mooney, Iddo Friedberg, Predrag Radivojac

To review progress in the field, the analysis also compared the best methods participating in CAFA1 to those of CAFA2.

Quantitative Methods

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