Search Results for author: Egbert Castro

Found 2 papers, 2 papers with code

ReLSO: A Transformer-based Model for Latent Space Optimization and Generation of Proteins

1 code implementation24 Jan 2022 Egbert Castro, Abhinav Godavarthi, Julian Rubinfien, Kevin B. Givechian, Dhananjay Bhaskar, Smita Krishnaswamy

Using ReLSO, we explicitly model the sequence-function landscape of large labeled datasets and generate new molecules by optimizing within the latent space using gradient-based methods.

Uncovering the Folding Landscape of RNA Secondary Structure with Deep Graph Embeddings

2 code implementations12 Jun 2020 Egbert Castro, Andrew Benz, Alexander Tong, Guy Wolf, Smita Krishnaswamy

We propose a geometric scattering autoencoder (GSAE) network for learning such graph embeddings.

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