Search Results for author: Emilie Purvine

Found 8 papers, 1 papers with code

$G$-Mapper: Learning a Cover in the Mapper Construction

1 code implementation12 Sep 2023 Enrique Alvarado, Robin Belton, Emily Fischer, Kang-Ju Lee, Sourabh Palande, Sarah Percival, Emilie Purvine

The Mapper algorithm is a visualization technique in topological data analysis (TDA) that outputs a graph reflecting the structure of a given dataset.

Topological Data Analysis

Experimental Observations of the Topology of Convolutional Neural Network Activations

no code implementations1 Dec 2022 Emilie Purvine, Davis Brown, Brett Jefferson, Cliff Joslyn, Brenda Praggastis, Archit Rathore, Madelyn Shapiro, Bei Wang, Youjia Zhou

Topological data analysis (TDA) is a branch of computational mathematics, bridging algebraic topology and data science, that provides compact, noise-robust representations of complex structures.

Image Classification Topological Data Analysis

The SVD of Convolutional Weights: A CNN Interpretability Framework

no code implementations14 Aug 2022 Brenda Praggastis, Davis Brown, Carlos Ortiz Marrero, Emilie Purvine, Madelyn Shapiro, Bei Wang

Fully connected layers can be studied by decomposing their weight matrices using a singular value decomposition, in effect studying the correlations between the rows in each matrix to discover the dynamics of the map.

Image Classification

Proceedings of TDA: Applications of Topological Data Analysis to Data Science, Artificial Intelligence, and Machine Learning Workshop at SDM 2022

no code implementations3 Apr 2022 R. W. R. Darling, John A. Emanuello, Emilie Purvine, Ahmad Ridley

Topological Data Analysis (TDA) is a rigorous framework that borrows techniques from geometric and algebraic topology, category theory, and combinatorics in order to study the "shape" of such complex high-dimensional data.

Topological Data Analysis

Sheaves as a Framework for Understanding and Interpreting Model Fit

no code implementations21 May 2021 Henry Kvinge, Brett Jefferson, Cliff Joslyn, Emilie Purvine

As data grows in size and complexity, finding frameworks which aid in interpretation and analysis has become critical.

Hypergraph Models of Biological Networks to Identify Genes Critical to Pathogenic Viral Response

no code implementations6 Oct 2020 Song Feng, Emily Heath, Brett Jefferson, Cliff Joslyn, Henry Kvinge, Hugh D. Mitchell, Brenda Praggastis, Amie J. Eisfeld, Amy C. Sims, Larissa B. Thackray, Shufang Fan, Kevin B. Walters, Peter J. Halfmann, Danielle Westhoff-Smith, Qing Tan, Vineet D. Menachery, Timothy P. Sheahan, Adam S. Cockrell, Jacob F. Kocher, Kelly G. Stratton, Natalie C. Heller, Lisa M. Bramer, Michael S. Diamond, Ralph S. Baric, Katrina M. Waters, Yoshihiro Kawaoka, Jason E. McDermott, Emilie Purvine

Results: We compiled a novel data set of transcriptional host response to pathogenic viral infections and formulated relationships between genes as a hypergraph where hyperedges represent significantly perturbed genes, and vertices represent individual biological samples with specific experimental conditions.

Relative Hausdorff Distance for Network Analysis

no code implementations12 Jun 2019 Sinan G. Aksoy, Kathleen E. Nowak, Emilie Purvine, Stephen J. Young

Similarity measures are used extensively in machine learning and data science algorithms.

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