COGEDAP: A COmprehensive GEnomic Data Analysis Platform

no code implementations • 28 Dec 2022 • Bayram Cevdet Akdeniz, Oleksandr Frei, Espen Hagen, Tahir Tekin Filiz, Sandeep Karthikeyan, Joelle Pasman, Andreas Jangmo, Jacob Bergsted, John R. Shorter, Richard Zetterberg, Joeri Meijsen, Ida Elken Sonderby, Alfonso Buil, Martin Tesli, Yi Lu, Patrick Sullivan, Ole Andreassen, Eivind Hovig

The analyses can be done by running these auto-generated scripts with the software containers.

Reconciliation of weak pairwise spike-train correlations and highly coherent local field potentials across space

1 code implementation • 25 May 2018 • Johanna Senk, Espen Hagen, Sacha J. van Albada, Markus Diesmann

Based on model predictions of spiking activity and LFPs, we find that the upscaling procedure preserves the overall spiking statistics of the original model and reproduces asynchronous irregular spiking across populations and weak pairwise spike-train correlations in agreement with experimental data recorded in the sensory cortex.

YASS: Yet Another Spike Sorter

1 code implementation • NeurIPS 2017 • Jin Hyung Lee, David E. Carlson, Hooshmand Shokri Razaghi, Weichi Yao, Georges A. Goetz, Espen Hagen, Eleanor Batty, E.J. Chichilnisky, Gaute T. Einevoll, Liam Paninski

Spike sorting is a critical first step in extracting neural signals from large-scale electrophysiological data.

Clustering Spike Sorting +1