Search Results for author: Esra Abaci Turk

Found 14 papers, 9 papers with code

SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRI

1 code implementation21 Dec 2023 Benjamin Billot, Neel Dey, Daniel Moyer, Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, Ellen Grant, Polina Golland

Here we propose EquiTrack, the first method that uses recent steerable SE(3)-equivariant CNNs (E-CNN) for motion tracking.

Time Series

Shape-aware Segmentation of the Placenta in BOLD Fetal MRI Time Series

1 code implementation8 Dec 2023 S. Mazdak Abulnaga, Neel Dey, Sean I. Young, Eileen Pan, Katherine I. Hobgood, Clinton J. Wang, P. Ellen Grant, Esra Abaci Turk, Polina Golland

In this work, we propose a machine learning segmentation framework for placental BOLD MRI and apply it to segmenting each volume in a time series.

Placenta Segmentation Segmentation +1

Dynamic Neural Fields for Learning Atlases of 4D Fetal MRI Time-series

1 code implementation6 Nov 2023 Zeen Chi, Zhongxiao Cong, Clinton J. Wang, Yingcheng Liu, Esra Abaci Turk, P. Ellen Grant, S. Mazdak Abulnaga, Polina Golland, Neel Dey

We apply our method to learning subject-specific atlases and motion stabilization of dynamic BOLD MRI time-series of fetuses in utero.

Time Series

Automatic Segmentation of the Placenta in BOLD MRI Time Series

1 code implementation4 Aug 2022 S. Mazdak Abulnaga, Sean I. Young, Katherine Hobgood, Eileen Pan, Clinton J. Wang, P. Ellen Grant, Esra Abaci Turk, Polina Golland

In this work, we propose a machine learning model based on a U-Net neural network architecture to automatically segment the placenta in BOLD MRI and apply it to segmenting each volume in a time series.

Placenta Segmentation Time Series +1

Volumetric Parameterization of the Placenta to a Flattened Template

1 code implementation15 Nov 2021 S. Mazdak Abulnaga, Esra Abaci Turk, Mikhail Bessmeltsev, P. Ellen Grant, Justin Solomon, Polina Golland

However, due to the curved and highly variable in vivo shape of the placenta, interpreting and visualizing these images is difficult.

Anatomy Local Distortion

Rapid head-pose detection for automated slice prescription of fetal-brain MRI

no code implementations8 Oct 2021 Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, Leah Morgan, Paul Wighton, M. Dylan Tisdall, Martin Reuter, Elfar Adalsteinsson, P. Ellen Grant, Lawrence L. Wald, André J. W. van der Kouwe

In fetal-brain MRI, head-pose changes between prescription and acquisition present a challenge to obtaining the standard sagittal, coronal and axial views essential to clinical assessment.

Enhanced detection of fetal pose in 3D MRI by Deep Reinforcement Learning with physical structure priors on anatomy

no code implementations16 Jul 2020 Molin Zhang, Junshen Xu, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson

The proposed DRL for fetal pose landmark search demonstrates a potential clinical utility for online detection of fetal motion that guides real-time mitigation of motion artifacts as well as health diagnosis during MRI of the pregnant mother.

Anatomy Decision Making

Semi-Supervised Learning for Fetal Brain MRI Quality Assessment with ROI consistency

no code implementations23 Jun 2020 Junshen Xu, Sayeri Lala, Borjan Gagoski, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson

The proposed method is also implemented and evaluated on an MR scanner, which demonstrates the feasibility of online image quality assessment and image reacquisition during fetal MR scans.

Image Quality Assessment

Fetal Pose Estimation in Volumetric MRI using a 3D Convolution Neural Network

no code implementations10 Jul 2019 Junshen Xu, Molin Zhang, Esra Abaci Turk, Larry Zhang, Ellen Grant, Kui Ying, Polina Golland, Elfar Adalsteinsson

The performance and diagnostic utility of magnetic resonance imaging (MRI) in pregnancy is fundamentally constrained by fetal motion.

Pose Estimation Time Series +1

Placental Flattening via Volumetric Parameterization

1 code implementation12 Mar 2019 S. Mazdak Abulnaga, Esra Abaci Turk, Mikhail Bessmeltsev, P. Ellen Grant, Justin Solomon, Polina Golland

We formulate our method as a map from the in vivo shape to a flattened template that minimizes the symmetric Dirichlet energy to control distortion throughout the volume.

Anatomy

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