1 code implementation • 21 Dec 2023 • Benjamin Billot, Neel Dey, Daniel Moyer, Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, Ellen Grant, Polina Golland
Here we propose EquiTrack, the first method that uses recent steerable SE(3)-equivariant CNNs (E-CNN) for motion tracking.
1 code implementation • 8 Dec 2023 • S. Mazdak Abulnaga, Neel Dey, Sean I. Young, Eileen Pan, Katherine I. Hobgood, Clinton J. Wang, P. Ellen Grant, Esra Abaci Turk, Polina Golland
In this work, we propose a machine learning segmentation framework for placental BOLD MRI and apply it to segmenting each volume in a time series.
1 code implementation • 6 Nov 2023 • Zeen Chi, Zhongxiao Cong, Clinton J. Wang, Yingcheng Liu, Esra Abaci Turk, P. Ellen Grant, S. Mazdak Abulnaga, Polina Golland, Neel Dey
We apply our method to learning subject-specific atlases and motion stabilization of dynamic BOLD MRI time-series of fetuses in utero.
1 code implementation • 5 Oct 2023 • Yingcheng Liu, Neerav Karani, Neel Dey, S. Mazdak Abulnaga, Junshen Xu, P. Ellen Grant, Esra Abaci Turk, Polina Golland
The placenta plays a crucial role in fetal development.
1 code implementation • 13 Jul 2023 • Neel Dey, S. Mazdak Abulnaga, Benjamin Billot, Esra Abaci Turk, P. Ellen Grant, Adrian V. Dalca, Polina Golland
Star-convex shapes arise across bio-microscopy and radiology in the form of nuclei, nodules, metastases, and other units.
1 code implementation • 4 Aug 2022 • S. Mazdak Abulnaga, Sean I. Young, Katherine Hobgood, Eileen Pan, Clinton J. Wang, P. Ellen Grant, Esra Abaci Turk, Polina Golland
In this work, we propose a machine learning model based on a U-Net neural network architecture to automatically segment the placenta in BOLD MRI and apply it to segmenting each volume in a time series.
1 code implementation • 15 Nov 2021 • S. Mazdak Abulnaga, Esra Abaci Turk, Mikhail Bessmeltsev, P. Ellen Grant, Justin Solomon, Polina Golland
However, due to the curved and highly variable in vivo shape of the placenta, interpreting and visualizing these images is difficult.
no code implementations • 8 Oct 2021 • Malte Hoffmann, Esra Abaci Turk, Borjan Gagoski, Leah Morgan, Paul Wighton, M. Dylan Tisdall, Martin Reuter, Elfar Adalsteinsson, P. Ellen Grant, Lawrence L. Wald, André J. W. van der Kouwe
In fetal-brain MRI, head-pose changes between prescription and acquisition present a challenge to obtaining the standard sagittal, coronal and axial views essential to clinical assessment.
1 code implementation • 23 Jun 2021 • Junshen Xu, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson
Fetal motion is unpredictable and rapid on the scale of conventional MR scan times.
no code implementations • 18 Mar 2021 • Daniel Moyer, Esra Abaci Turk, P Ellen Grant, William M. Wells, Polina Golland
The transformation is then derived in closed form from the outputs of the filters.
no code implementations • 16 Jul 2020 • Molin Zhang, Junshen Xu, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson
The proposed DRL for fetal pose landmark search demonstrates a potential clinical utility for online detection of fetal motion that guides real-time mitigation of motion artifacts as well as health diagnosis during MRI of the pregnant mother.
no code implementations • 23 Jun 2020 • Junshen Xu, Sayeri Lala, Borjan Gagoski, Esra Abaci Turk, P. Ellen Grant, Polina Golland, Elfar Adalsteinsson
The proposed method is also implemented and evaluated on an MR scanner, which demonstrates the feasibility of online image quality assessment and image reacquisition during fetal MR scans.
no code implementations • 10 Jul 2019 • Junshen Xu, Molin Zhang, Esra Abaci Turk, Larry Zhang, Ellen Grant, Kui Ying, Polina Golland, Elfar Adalsteinsson
The performance and diagnostic utility of magnetic resonance imaging (MRI) in pregnancy is fundamentally constrained by fetal motion.
1 code implementation • 12 Mar 2019 • S. Mazdak Abulnaga, Esra Abaci Turk, Mikhail Bessmeltsev, P. Ellen Grant, Justin Solomon, Polina Golland
We formulate our method as a map from the in vivo shape to a flattened template that minimizes the symmetric Dirichlet energy to control distortion throughout the volume.