Search Results for author: Esra Akbas

Found 10 papers, 2 papers with code

HeTriNet: Heterogeneous Graph Triplet Attention Network for Drug-Target-Disease Interaction

no code implementations30 Nov 2023 Farhan Tanvir, Khaled Mohammed Saifuddin, Tanvir Hossain, Arunkumar Bagavathi, Esra Akbas

To address these challenges, we effectively model the interconnectedness of all entities in a heterogeneous graph and develop a novel Heterogeneous Graph Triplet Attention Network (\texttt{HeTriNet}).

Drug Discovery

Brain Networks and Intelligence: A Graph Neural Network Based Approach to Resting State fMRI Data

1 code implementation6 Nov 2023 Bishal Thapaliya, Esra Akbas, Jiayu Chen, Raam Sapkota, Bhaskar Ray, Pranav Suresh, Vince Calhoun, Jingyu Liu

Resting-state functional magnetic resonance imaging (rsfMRI) is a powerful tool for investigating the relationship between brain function and cognitive processes as it allows for the functional organization of the brain to be captured without relying on a specific task or stimuli.

Topology-guided Hypergraph Transformer Network: Unveiling Structural Insights for Improved Representation

no code implementations14 Oct 2023 Khaled Mohammed Saifuddin, Mehmet Emin Aktas, Esra Akbas

Further, we present a structure-aware self-attention mechanism that discovers the important nodes and hyperedges from both semantic and structural viewpoints.

Graph Representation Learning Node Classification

MPool: Motif-Based Graph Pooling

no code implementations7 Mar 2023 Muhammad Ifte Khairul Islam, Max Khanov, Esra Akbas

Graph Neural networks (GNNs) have recently become a powerful technique for many graph-related tasks including graph classification.

Clustering Graph Classification

Seq-HyGAN: Sequence Classification via Hypergraph Attention Network

no code implementations4 Mar 2023 Khaled Mohammed Saifuddin, Corey May, Farhan Tanvir, Muhammad Ifte Khairul Islam, Esra Akbas

To address these challenges in the sequence classification problems, we propose a novel Hypergraph Attention Network model, namely Seq-HyGAN.

Anomaly Detection Classification

DDI Prediction via Heterogeneous Graph Attention Networks

no code implementations12 Jul 2022 Farhan Tanvir, Khaled Mohammed Saifuddin, Esra Akbas

Then, we develop a heterogeneous graph attention network to learn DDIs using relations of drugs with other entities.

Graph Attention

HyGNN: Drug-Drug Interaction Prediction via Hypergraph Neural Network

no code implementations25 Jun 2022 Khaled Mohammed Saifuddin, Briana Bumgardner, Farhan Tanvir, Esra Akbas

However, these models have a high chance of failure, especially for the new drugs when all the information is not available.

Hypergraph Laplacians in Diffusion Framework

no code implementations17 Feb 2021 Mehmet Emin Aktas, Esra Akbas

Networks are important structures used to model complex systems where interactions take place.

Social and Information Networks Spectral Theory 55U10, 91D30

Network Embedding: on Compression and Learning

1 code implementation5 Jul 2019 Esra Akbas, Mehmet Aktas

For the first problem, we propose a neighborhood similarity based graph compression method that compresses the input graph to get a smaller graph without losing any/much information about the global structure of the graph and the local proximity of the vertices in the graph.

Graph Embedding Multi-Label Classification +1

Opinion Mining on Non-English Short Text

no code implementations31 Mar 2017 Esra Akbas

We focus on a non-English language that has few resources for text mining.

Opinion Mining Sentiment Analysis

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