Search Results for author: Fabio Rinaldi

Found 18 papers, 2 papers with code

COVID-19 Twitter Monitor: Aggregating and Visualizing COVID-19 Related Trends in Social Media

no code implementations SMM4H (COLING) 2020 Joseph Cornelius, Tilia Ellendorff, Lenz Furrer, Fabio Rinaldi

Social media platforms offer extensive information about the development of the COVID-19 pandemic and the current state of public health.

Approaching SMM4H with auto-regressive language models and back-translation

no code implementations NAACL (SMM4H) 2021 Joseph Cornelius, Tilia Ellendorff, Fabio Rinaldi

We describe our submissions to the 6th edition of the Social Media Mining for Health Applications (SMM4H) shared task.

Translation

Boosting Radiology Report Generation by Infusing Comparison Prior

no code implementations8 May 2023 Sanghwan Kim, Farhad Nooralahzadeh, Morteza Rohanian, Koji Fujimoto, Mizuho Nishio, Ryo Sakamoto, Fabio Rinaldi, Michael Krauthammer

To tackle this issue, we propose a novel approach that leverages a rule-based labeler to extract comparison prior information from radiology reports.

Medical Report Generation Text Generation

SST-BERT at SemEval-2020 Task 1: Semantic Shift Tracing by Clustering in BERT-based Embedding Spaces

2 code implementations SEMEVAL 2020 K Vani, Sandra Mitrovic, Alessandro Antonucci, Fabio Rinaldi

Lexical semantic change detection (also known as semantic shift tracing) is a task of identifying words that have changed their meaning over time.

Change Detection Clustering

MultiGBS: A multi-layer graph approach to biomedical summarization

no code implementations27 Aug 2020 Ensieh Davoodijam, Nasser Ghadiri, Maryam Lotfi Shahreza, Fabio Rinaldi

Automatic text summarization methods generate a shorter version of the input text to assist the reader in gaining a quick yet informative gist.

Extractive Text Summarization Semantic Similarity +2

Parallel sequence tagging for concept recognition

3 code implementations16 Mar 2020 Lenz Furrer, Joseph Cornelius, Fabio Rinaldi

In all 20 annotation sets of the concept-annotation task, our system outperforms the pipeline system reported as a baseline in the CRAFT shared task 2019.

named-entity-recognition Named Entity Recognition +1

Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review

no code implementations15 Aug 2019 Seyedmostafa Sheikhalishahi, Riccardo Miotto, Joel T. Dudley, Alberto Lavelli, Fabio Rinaldi, Venet Osmani

There is a notable use of relatively simple methods, such as shallow classifiers (or combination with rule-based methods), due to the interpretability of predictions, which still represents a significant issue for more complex methods.

Clinical Knowledge Word Embeddings

Approaching SMM4H with Merged Models and Multi-task Learning

no code implementations WS 2019 Tilia Ellendorff, Lenz Furrer, Nicola Colic, No{\"e}mi Aepli, Fabio Rinaldi

We describe our submissions to the 4th edition of the Social Media Mining for Health Applications (SMM4H) shared task.

Multi-Task Learning

UZH@SMM4H: System Descriptions

no code implementations WS 2018 Tilia Ellendorff, Joseph Cornelius, Heath Gordon, Nicola Colic, Fabio Rinaldi

Our team at the University of Z{\"u}rich participated in the first 3 of the 4 sub-tasks at the Social Media Mining for Health Applications (SMM4H) shared task.

Document Classification General Classification +4

Author Name Disambiguation in MEDLINE Based on Journal Descriptors and Semantic Types

no code implementations WS 2016 Dina Vishnyakova, Raul Rodriguez-Esteban, Khan Ozol, Fabio Rinaldi

The evaluation of different feature models shows that their inclusion has an impact equivalent to that of other important features such as email address.

Using Large Biomedical Databases as Gold Annotations for Automatic Relation Extraction

no code implementations LREC 2014 Tilia Ellendorff, Fabio Rinaldi, Simon Clematide

We show how to use large biomedical databases in order to obtain a gold standard for training a machine learning system over a corpus of biomedical text.

Document Classification Entity Extraction using GAN +2

Dependency parsing for interaction detection in pharmacogenomics

no code implementations LREC 2012 Gerold Schneider, Fabio Rinaldi, Simon Clematide

We give an overview of our approach to the extraction of interactions between pharmacogenomic entities like drugs, genes and diseases and suggest classes of interaction types driven by data from PharmGKB and partly following the top level ontology WordNet and biomedical types from BioNLP.

Dependency Parsing

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