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Found 3 papers, 2 papers with code
Densely sampled phylogenies frequently deviate from maximum parsimony in simple and local ways
Why do phylogenetic algorithms fail when they return incorrect answers?
TreeFlow: probabilistic programming and automatic differentiation for phylogenetics
Probabilistic programming frameworks are powerful tools for statistical modelling and inference.
Variational Bayesian Supertrees
Given overlapping subsets of a set of taxa (e. g. species), and posterior distributions on phylogenetic tree topologies for each of these taxon sets, how can we infer a posterior distribution on phylogenetic tree topologies for the entire taxon set?
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