1 code implementation • 30 Sep 2023 • Jiahong Ouyang, Qingyu Zhao, Ehsan Adeli, Wei Peng, Greg Zaharchuk, Kilian M. Pohl
Interpretability is a key issue when applying deep learning models to longitudinal brain MRIs.
no code implementations • 7 Sep 2023 • Sophie Ostmeier, Brian Axelrod, Benjamin Pulli, Benjamin F. J. Verhaaren, Abdelkader Mahammedi, Yongkai Liu, Christian Federau, Greg Zaharchuk, Jeremy J. Heit
Conclusion: A model trained on random expert sampling can identify the presence and location of acute ischemic brain tissue on Non-Contrast CT similar to CT perfusion and with better consistency than experts.
no code implementations • 22 Jul 2023 • Dayang Wang, Srivathsa Pasumarthi, Greg Zaharchuk, Ryan Chamberlain
In this work, we formulate a novel transformer (Gformer) based iterative modelling approach for the synthesis of images with arbitrary contrast enhancement that corresponds to different dose levels.
1 code implementation • 24 Nov 2022 • Sophie Ostmeier, Brian Axelrod, Benjamin F. J. Verhaaren, Soren Christensen, Abdelkader Mahammedi, Yongkai Liu, Benjamin Pulli, Li-Jia Li, Greg Zaharchuk, Jeremy J. Heit
The optimized model trained on expert A was compared to test experts B and C. We used a one-sided Wilcoxon signed-rank test to test for the non-inferiority of the model-expert compared to the inter-expert agreement.
no code implementations • 22 Nov 2022 • Ramy Hussein, David Shin, Moss Zhao, Jia Guo, Guido Davidzon, Michael Moseley, Greg Zaharchuk
Such methods may enable more widespread and accurate CBF evaluation in larger cohorts who cannot undergo PET imaging due to radiation concerns, lack of access, or logistic challenges.
no code implementations • 28 Apr 2022 • Jiang Liu, Srivathsa Pasumarthi, Ben Duffy, Enhao Gong, Keshav Datta, Greg Zaharchuk
In this work, we formulate missing data imputation as a sequence-to-sequence learning problem and propose a multi-contrast multi-scale Transformer (MMT), which can take any subset of input contrasts and synthesize those that are missing.
no code implementations • 12 Feb 2022 • Ramy Hussein, Moss Zhao, David Shin, Jia Guo, Kevin T. Chen, Rui D. Armindo, Guido Davidzon, Michael Moseley, Greg Zaharchuk
Accurate quantification of cerebral blood flow (CBF) is essential for the diagnosis and assessment of cerebrovascular diseases such as Moyamoya, carotid stenosis, aneurysms, and stroke.
1 code implementation • 5 Jul 2021 • Ujjwal Baid, Satyam Ghodasara, Suyash Mohan, Michel Bilello, Evan Calabrese, Errol Colak, Keyvan Farahani, Jayashree Kalpathy-Cramer, Felipe C. Kitamura, Sarthak Pati, Luciano M. Prevedello, Jeffrey D. Rudie, Chiharu Sako, Russell T. Shinohara, Timothy Bergquist, Rong Chai, James Eddy, Julia Elliott, Walter Reade, Thomas Schaffter, Thomas Yu, Jiaxin Zheng, Ahmed W. Moawad, Luiz Otavio Coelho, Olivia McDonnell, Elka Miller, Fanny E. Moron, Mark C. Oswood, Robert Y. Shih, Loizos Siakallis, Yulia Bronstein, James R. Mason, Anthony F. Miller, Gagandeep Choudhary, Aanchal Agarwal, Cristina H. Besada, Jamal J. Derakhshan, Mariana C. Diogo, Daniel D. Do-Dai, Luciano Farage, John L. Go, Mohiuddin Hadi, Virginia B. Hill, Michael Iv, David Joyner, Christie Lincoln, Eyal Lotan, Asako Miyakoshi, Mariana Sanchez-Montano, Jaya Nath, Xuan V. Nguyen, Manal Nicolas-Jilwan, Johanna Ortiz Jimenez, Kerem Ozturk, Bojan D. Petrovic, Chintan Shah, Lubdha M. Shah, Manas Sharma, Onur Simsek, Achint K. Singh, Salil Soman, Volodymyr Statsevych, Brent D. Weinberg, Robert J. Young, Ichiro Ikuta, Amit K. Agarwal, Sword C. Cambron, Richard Silbergleit, Alexandru Dusoi, Alida A. Postma, Laurent Letourneau-Guillon, Gloria J. Guzman Perez-Carrillo, Atin Saha, Neetu Soni, Greg Zaharchuk, Vahe M. Zohrabian, Yingming Chen, Milos M. Cekic, Akm Rahman, Juan E. Small, Varun Sethi, Christos Davatzikos, John Mongan, Christopher Hess, Soonmee Cha, Javier Villanueva-Meyer, John B. Freymann, Justin S. Kirby, Benedikt Wiestler, Priscila Crivellaro, Rivka R. Colen, Aikaterini Kotrotsou, Daniel Marcus, Mikhail Milchenko, Arash Nazeri, Hassan Fathallah-Shaykh, Roland Wiest, Andras Jakab, Marc-Andre Weber, Abhishek Mahajan, Bjoern Menze, Adam E. Flanders, Spyridon Bakas
The BraTS 2021 challenge celebrates its 10th anniversary and is jointly organized by the Radiological Society of North America (RSNA), the American Society of Neuroradiology (ASNR), and the Medical Image Computing and Computer Assisted Interventions (MICCAI) society.
no code implementations • 8 Mar 2021 • Ke Wang, Enhao Gong, Yuxin Zhang, Suchadrima Banerjee, Greg Zaharchuk, John Pauly
Multi-contrast Magnetic Resonance Imaging (MRI) acquisitions from a single scan have tremendous potential to streamline exams and reduce imaging time.
1 code implementation • 5 Mar 2021 • Jiahong Ouyang, Qingyu Zhao, Ehsan Adeli, Edith V Sullivan, Adolf Pfefferbaum, Greg Zaharchuk, Kilian M Pohl
Longitudinal MRIs are often used to capture the gradual deterioration of brain structure and function caused by aging or neurological diseases.
1 code implementation • 23 Feb 2021 • Jiahong Ouyang, Ehsan Adeli, Kilian M. Pohl, Qingyu Zhao, Greg Zaharchuk
To address this issue, we propose a margin loss that regularizes the similarity in relationships of the representations across subjects and modalities.
no code implementations • 23 Feb 2020 • Darvin Yi, Endre Grøvik, Michael Iv, Elizabeth Tong, Greg Zaharchuk, Daniel Rubin
We introduce a novel ensembling method, Random Bundle (RB), that improves performance for brain metastases segmentation.
no code implementations • MIDL 2019 • Darvin Yi, Endre Grøvik, Michael Iv, Elizabeth Tong, Greg Zaharchuk, Daniel Rubin
Even with a simulated false negative rate as high as 50%, applying our loss function to randomly censored data preserves maximum sensitivity at 97% of the baseline with uncensored training data, compared to just 10% for a standard loss function.
no code implementations • 27 Dec 2019 • Endre Grøvik, Darvin Yi, Michael Iv, Elizabeth Tong, Line Brennhaug Nilsen, Anna Latysheva, Cathrine Saxhaug, Kari Dolven Jacobsen, Åslaug Helland, Kyrre Eeg Emblem, Daniel Rubin, Greg Zaharchuk
A deep learning based segmentation model for automatic segmentation of brain metastases, named DropOut, was trained on multi-sequence MRI from 100 patients, and validated/tested on 10/55 patients.
no code implementations • 18 Dec 2019 • Darvin Yi, Endre Grøvik, Michael Iv, Elizabeth Tong, Kyrre Eeg Emblem, Line Brennhaug Nilsen, Cathrine Saxhaug, Anna Latysheva, Kari Dolven Jacobsen, Åslaug Helland, Greg Zaharchuk, Daniel Rubin
We illustrate not only the generalizability of the network but also the utility of this robustness when applying the trained model to data from a different center, which does not use the same pulse sequences.
no code implementations • 18 Mar 2019 • Endre Grøvik, Darvin Yi, Michael Iv, Elisabeth Tong, Daniel L. Rubin, Greg Zaharchuk
For an optimal probability threshold, detection and segmentation performance was assessed on a per metastasis basis.
1 code implementation • 15 Mar 2018 • Jaeyeon Yoon, Enhao Gong, Itthi Chatnuntawech, Berkin Bilgic, Jingu Lee, Woojin Jung, Jingyu Ko, Hosan Jung, Kawin Setsompop, Greg Zaharchuk, Eung Yeop Kim, John Pauly, Jong-Ho Lee
The QSMnet maps of the test dataset were compared with those from TKD and MEDI for image quality and consistency in multiple head orientations.
Image and Video Processing
no code implementations • 12 Dec 2017 • Junshen Xu, Enhao Gong, John Pauly, Greg Zaharchuk
Experiments shows the proposed method can reconstruct low-dose PET image to a standard-dose quality with only two-hundredth dose.
2 code implementations • 31 May 2017 • Morteza Mardani, Enhao Gong, Joseph Y. Cheng, Shreyas Vasanawala, Greg Zaharchuk, Marcus Alley, Neil Thakur, Song Han, William Dally, John M. Pauly, Lei Xing
A multilayer convolutional neural network is then jointly trained based on diagnostic quality images to discriminate the projection quality.