Search Results for author: Henning Muller

Found 7 papers, 5 papers with code

Structural-Based Uncertainty in Deep Learning Across Anatomical Scales: Analysis in White Matter Lesion Segmentation

1 code implementation15 Nov 2023 Nataliia Molchanova, Vatsal Raina, Andrey Malinin, Francesco La Rosa, Adrien Depeursinge, Mark Gales, Cristina Granziera, Henning Muller, Mara Graziani, Meritxell Bach Cuadra

The results from a multi-centric MRI dataset of 172 patients demonstrate that our proposed measures more effectively capture model errors at the lesion and patient scales compared to measures that average voxel-scale uncertainty values.

Lesion Segmentation Uncertainty Quantification

Disentangling Neuron Representations with Concept Vectors

1 code implementation19 Apr 2023 Laura O'Mahony, Vincent Andrearczyk, Henning Muller, Mara Graziani

Mechanistic interpretability aims to understand how models store representations by breaking down neural networks into interpretable units.

Tackling Bias in the Dice Similarity Coefficient: Introducing nDSC for White Matter Lesion Segmentation

1 code implementation10 Feb 2023 Vatsal Raina, Nataliia Molchanova, Mara Graziani, Andrey Malinin, Henning Muller, Meritxell Bach Cuadra, Mark Gales

This work describes a detailed analysis of the recently proposed normalised Dice Similarity Coefficient (nDSC) for binary segmentation tasks as an adaptation of DSC which scales the precision at a fixed recall rate to tackle this bias.

Lesion Segmentation Segmentation

The Brain Tumor Sequence Registration (BraTS-Reg) Challenge: Establishing Correspondence Between Pre-Operative and Follow-up MRI Scans of Diffuse Glioma Patients

no code implementations13 Dec 2021 Bhakti Baheti, Satrajit Chakrabarty, Hamed Akbari, Michel Bilello, Benedikt Wiestler, Julian Schwarting, Evan Calabrese, Jeffrey Rudie, Syed Abidi, Mina Mousa, Javier Villanueva-Meyer, Brandon K. K. Fields, Florian Kofler, Russell Takeshi Shinohara, Juan Eugenio Iglesias, Tony C. W. Mok, Albert C. S. Chung, Marek Wodzinski, Artur Jurgas, Niccolo Marini, Manfredo Atzori, Henning Muller, Christoph Grobroehmer, Hanna Siebert, Lasse Hansen, Mattias P. Heinrich, Luca Canalini, Jan Klein, Annika Gerken, Stefan Heldmann, Alessa Hering, Horst K. Hahn, Mingyuan Meng, Lei Bi, Dagan Feng, Jinman Kim, Ramy A. Zeineldin, Mohamed E. Karar, Franziska Mathis-Ullrich, Oliver Burgert, Javid Abderezaei, Aymeric Pionteck, Agamdeep Chopra, Mehmet Kurt, Kewei Yan, Yonghong Yan, Zhe Tang, Jianqiang Ma, Sahar Almahfouz Nasser, Nikhil Cherian Kurian, Mohit Meena, Saqib Shamsi, Amit Sethi, Nicholas J. Tustison, Brian B. Avants, Philip Cook, James C. Gee, Lin Tian, Hastings Greer, Marc Niethammer, Andrew Hoopes, Malte Hoffmann, Adrian V. Dalca, Stergios Christodoulidis, Theo Estiene, Maria Vakalopoulou, Nikos Paragios, Daniel S. Marcus, Christos Davatzikos, Aristeidis Sotiras, Bjoern Menze, Spyridon Bakas, Diana Waldmannstetter

Registration of longitudinal brain MRI scans containing pathologies is challenging due to dramatic changes in tissue appearance.

Descriptive Image Registration +1

Learning Interpretable Microscopic Features of Tumor by Multi-task Adversarial CNNs To Improve Generalization

1 code implementation4 Aug 2020 Mara Graziani, Sebastian Otalora, Stephane Marchand-Maillet, Henning Muller, Vincent Andrearczyk

Here we show that our architecture, by learning end-to-end an uncertainty-based weighting combination of multi-task and adversarial losses, is encouraged to focus on pathology features such as density and pleomorphism of nuclei, e. g. variations in size and appearance, while discarding misleading features such as staining differences.

Multi-Task Learning

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