Search Results for author: Jacob G. Scott

Found 4 papers, 4 papers with code

Inferring Density-Dependent Population Dynamics Mechanisms through Rate Disambiguation for Logistic Birth-Death Processes

1 code implementation10 May 2022 Linh Huynh, Jacob G. Scott, Peter J. Thomas

Typically, we can only measure net growth rates, but the underlying density-dependent mechanisms that give rise to the observed dynamics can manifest in birth processes, death processes, or both.

Time Series Time Series Analysis

Controlling the speed and trajectory of evolution with counterdiabatic driving

2 code implementations8 Dec 2019 Shamreen Iram, Emily Dolson, Joshua Chiel, Julia Pelesko, Nikhil Krishnan, Özenç Güngör, Benjamin Kuznets-Speck, Sebastian Deffner, Efe Ilker, Jacob G. Scott, Michael Hinczewski

The pace and unpredictability of evolution are critically relevant in a variety of modern challenges: combating drug resistance in pathogens and cancer, understanding how species respond to environmental perturbations like climate change, and developing artificial selection approaches for agriculture.

Statistical Mechanics Populations and Evolution

A flat persistence diagram for improved visualization of persistent homology

1 code implementation11 Dec 2018 Raoul R. Wadhwa, Andrew Dhawan, Drew F. K. Williamson, Jacob G. Scott

Visualization in the emerging field of topological data analysis has progressed from persistence barcodes and persistence diagrams to display of two-parameter persistent homology.

Applications

Optimizing adaptive cancer therapy: dynamic programming and evolutionary game theory

1 code implementation5 Dec 2018 Mark Gluzman, Jacob G. Scott, Alexander Vladimirsky

In particular, we optimize the total drug usage and time to recovery by solving a Hamilton-Jacobi-Bellman equation based on a mathematical model of tumor evolution.

Quantitative Methods 92C50, 49N90, 49Lxx

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