Search Results for author: James R. Clough

Found 13 papers, 2 papers with code

A persistent homology-based topological loss function for multi-class CNN segmentation of cardiac MRI

no code implementations21 Aug 2020 Nick Byrne, James R. Clough, Giovanni Montana, Andrew P. King

With respect to spatial overlap, CNN-based segmentation of short axis cardiovascular magnetic resonance (CMR) images has achieved a level of performance consistent with inter observer variation.

Segmentation

Deep Learning Based Detection and Correction of Cardiac MR Motion Artefacts During Reconstruction for High-Quality Segmentation

no code implementations11 Oct 2019 Ilkay Oksuz, James R. Clough, Bram Ruijsink, Esther Puyol Anton, Aurelien Bustin, Gastao Cruz, Claudia Prieto, Andrew P. King, Julia A. Schnabel

In this paper, we discuss the implications of image motion artefacts on cardiac MR segmentation and compare a variety of approaches for jointly correcting for artefacts and segmenting the cardiac cavity.

Image Reconstruction Image Segmentation +2

A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology

1 code implementation4 Oct 2019 James R. Clough, Nicholas Byrne, Ilkay Oksuz, Veronika A. Zimmer, Julia A. Schnabel, Andrew P. King

We show that the incorporation of the prior knowledge of the topology of this anatomy improves the resulting segmentations in terms of both the topological accuracy and the Dice coefficient.

Anatomy Image Segmentation +3

dAUTOMAP: decomposing AUTOMAP to achieve scalability and enhance performance

1 code implementation24 Sep 2019 Jo Schlemper, Ilkay Oksuz, James R. Clough, Jinming Duan, Andrew P. King, Julia A. Schnabel, Joseph V. Hajnal, Daniel Rueckert

AUTOMAP is a promising generalized reconstruction approach, however, it is not scalable and hence the practicality is limited.

Self-supervised Recurrent Neural Network for 4D Abdominal and In-utero MR Imaging

no code implementations28 Aug 2019 Tong Zhang, Laurence H. Jackson, Alena Uus, James R. Clough, Lisa Story, Mary A. Rutherford, Joseph V. Hajnal, Maria Deprez

The results show that the proposed pipeline can accurately estimate the respiratory state and reconstruct 4D SR volumes with better or similar performance to the 3D SVR pipeline with less than 20\% sparsely selected slices.

Image Reconstruction Motion Estimation +1

Topology-preserving augmentation for CNN-based segmentation of congenital heart defects from 3D paediatric CMR

no code implementations23 Aug 2019 Nick Byrne, James R. Clough, Isra Valverde, Giovanni Montana, Andrew P. King

In a series of five-fold cross-validations, we demonstrate the performance gain produced by this pipeline and the relevance of topological considerations to the segmentation of congenital heart defects.

Anatomy Data Augmentation +1

Assessing the Impact of Blood Pressure on Cardiac Function Using Interpretable Biomarkers and Variational Autoencoders

no code implementations13 Aug 2019 Esther Puyol-Antón, Bram Ruijsink, James R. Clough, Ilkay Oksuz, Daniel Rueckert, Reza Razavi, Andrew P. King

Maintaining good cardiac function for as long as possible is a major concern for healthcare systems worldwide and there is much interest in learning more about the impact of different risk factors on cardiac health.

Global and Local Interpretability for Cardiac MRI Classification

no code implementations14 Jun 2019 James R. Clough, Ilkay Oksuz, Esther Puyol-Anton, Bram Ruijsink, Andrew P. King, Julia A. Schnabel

Deep learning methods for classifying medical images have demonstrated impressive accuracy in a wide range of tasks but often these models are hard to interpret, limiting their applicability in clinical practice.

Classification General Classification +1

Explicit topological priors for deep-learning based image segmentation using persistent homology

no code implementations29 Jan 2019 James R. Clough, Ilkay Oksuz, Nicholas Byrne, Julia A. Schnabel, Andrew P. King

We present a novel method to explicitly incorporate topological prior knowledge into deep learning based segmentation, which is, to our knowledge, the first work to do so.

Image Segmentation Left Ventricle Segmentation +3

Hybed: Hyperbolic Neural Graph Embedding

no code implementations ICLR 2018 Benjamin Paul Chamberlain, James R. Clough, Marc Peter Deisenroth

Neural embeddings have been used with great success in Natural Language Processing (NLP) where they provide compact representations that encapsulate word similarity and attain state-of-the-art performance in a range of linguistic tasks.

Graph Embedding Word Similarity

Transitive Reduction of Citation Networks

no code implementations30 Oct 2013 James R. Clough, Jamie Gollings, Tamar V. Loach, Tim S. Evans

In many complex networks the vertices are ordered in time, and edges represent causal connections.

Physics and Society Digital Libraries Social and Information Networks

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