Search Results for author: John Ingraham

Found 3 papers, 1 papers with code

Generative Models for Graph-Based Protein Design

1 code implementation ICLR Workshop DeepGenStruct 2019 John Ingraham, Vikas Garg, Regina Barzilay, Tommi Jaakkola

Engineered proteins offer the potential to solve many problems in biomedicine, energy, and materials science, but creating designs that succeed is difficult in practice.

Protein Design Protein Folding

Learning Protein Structure with a Differentiable Simulator

no code implementations ICLR 2019 John Ingraham, Adam Riesselman, Chris Sander, Debora Marks

This gap between the expressive capabilities and sampling practicalities of energy-based models is exemplified by the protein folding problem, since energy landscapes underlie contemporary knowledge of protein biophysics but computer simulations are often unable to fold all but the smallest proteins from first-principles.

Protein Folding

Variational Inference for Sparse and Undirected Models

no code implementations ICML 2017 John Ingraham, Debora Marks

Undirected graphical models are applied in genomics, protein structure prediction, and neuroscience to identify sparse interactions that underlie discrete data.

Bayesian Inference Protein Structure Prediction +1

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