Search Results for author: Jonas Almeida

Found 3 papers, 2 papers with code

A FAIR platform for reproducing mutational signature detection on tumor sequencing data

1 code implementation2 Jun 2023 Aaron Ge, Tongwu Zhang, Clara Bodelon, Montserrat Garcia-Closas, Jonas Almeida, Jeya Balasubramanian

This paper presents a portable, privacy-preserving, in-browser platform for the reproducible assessment of mutational signature detection methods from sparse sequencing data generated by targeted gene panels.

Privacy Preserving

Halcyon -- A Pathology Imaging and Feature analysis and Management System

1 code implementation7 Apr 2023 Erich Bremer, Tammy DiPrima, Joseph Balsamo, Jonas Almeida, Rajarsi Gupta, Joel Saltz

Halcyon is a new pathology imaging analysis and feature management system based on W3C linked-data open standards and is designed to scale to support the needs for the voluminous production of features from deep-learning feature pipelines.

Management

Representing Whole Slide Cancer Image Features with Hilbert Curves

no code implementations13 May 2020 Erich Bremer, Jonas Almeida, Joel Saltz

In this paper we propose using Hilbert Curves simultaneously for spatial indexing and as a polygonal ROI representation.

whole slide images

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