2 code implementations • 19 Jul 2022 • Matteo Aldeghi, David E. Graff, Nathan Frey, Joseph A. Morrone, Edward O. Pyzer-Knapp, Kirk E. Jordan, Connor W. Coley
In molecular discovery and drug design, structure-property relationships and activity landscapes are often qualitatively or quantitatively analyzed to guide the navigation of chemical space.
2 code implementations • 3 May 2022 • David E. Graff, Matteo Aldeghi, Joseph A. Morrone, Kirk E. Jordan, Edward O. Pyzer-Knapp, Connor W. Coley
In this study, we propose an extension to the framework of model-guided optimization that mitigates inferences costs using a technique we refer to as design space pruning (DSP), which irreversibly removes poor-performing candidates from consideration.
no code implementations • 5 Apr 2022 • Seung-gu Kang, Jeffrey K. Weber, Joseph A. Morrone, Leili Zhang, Tien Huynh, Wendy D. Cornell
Proteins in complex with small molecule ligands represent the core of structure-based drug discovery.
no code implementations • 19 Jul 2021 • Seung-gu Kang, Joseph A. Morrone, Jeffrey K. Weber, Wendy D. Cornell
The application of deep learning to generative molecule design has shown early promise for accelerating lead series development.
no code implementations • 7 Oct 2019 • Joseph A. Morrone, Jeffrey K. Weber, Tien Huynh, Heng Luo, Wendy D. Cornell
We develop a deep learning model for binding mode prediction that uses docking ranking as input in combination with docking structures.