no code implementations • 11 May 2022 • Jiening Zhu, Harini Veeraraghavan, Larry Norton, Joseph O. Deasy, Allen Tannenbaum
We approach the directionality problem from a novel perspective by the use of the optimal transport map of a local image patch to a uni-color patch of its mean.
no code implementations • 16 Jul 2021 • Jue Jiang, Andreas Rimner, Joseph O. Deasy, Harini Veeraraghavan
Network design, methods to combine MRI with CT information, distillation learning under informative (MRI to CT), weak (CT to MRI) and equal teacher (MRI to MRI), and ablation tests were performed.
no code implementations • 26 Feb 2021 • Harini Veeraraghavan, Jue Jiang, Sharif Elguindi, Sean L. Berry, Ifeanyirochukwu Onochie, Aditya Apte, Laura Cervino, Joseph O. Deasy
NBSA's segmentations were less variable than multiple 3D methods, including for small organs with low soft-tissue contrast such as the submandibular glands (surface Dice of 0. 90).
no code implementations • 17 Feb 2021 • Jue Jiang, Sadegh Riyahi Alam, Ishita Chen, Perry Zhang, Andreas Rimner, Joseph O. Deasy, Harini Veeraraghavan
Validation was done on 20 weekly CBCTs from patients not used in training.
1 code implementation • 18 Jul 2020 • Jue Jiang, Yu Chi Hu, Neelam Tyagi, Andreas Rimner, Nancy Lee, Joseph O. Deasy, Sean Berry, Harini Veeraraghavan
Our method achieved an overall average DSC of 0. 87 on T1w and 0. 90 on T2w for the abdominal organs, 0. 82 on T2wFS for the parotid glands, and 0. 77 on T2w MRI for lung tumors.
no code implementations • MIDL 2019 • Hyemin Um, Jue Jiang, Maria Thor, Andreas Rimner, Leo Luo, Joseph O. Deasy, Harini Veeraraghavan
Our approach simultaneously combines feature streams computed at multiple image resolutions and feature levels through residual connections.
no code implementations • 10 Sep 2019 • Jue Jiang, Jason Hu, Neelam Tyagi, Andreas Rimner, Sean L. Berry, Joseph O. Deasy, Harini Veeraraghavan
Our approach, called cross-modality educed deep learning segmentation (CMEDL) combines CT and pseudo MR produced from CT by aligning their features to obtain segmentation on CT.
no code implementations • 22 May 2019 • Jung Hun Oh, Maryam Pouryahya, Aditi Iyer, Aditya P. Apte, Allen Tannenbaum, Joseph O. Deasy
The Wasserstein distance is a powerful metric based on the theory of optimal transport.
no code implementations • 31 Jan 2019 • Jue Jiang, Yu-Chi Hu, Neelam Tyagi, Pengpeng Zhang, Andreas Rimner, Joseph O. Deasy, Harini Veeraraghavan
This method produced the highest segmentation accuracy with a DSC of 0. 75 and the lowest Hausdroff distance on the test dataset.
no code implementations • 24 Aug 2018 • Sadegh Riyahi, Wookjin Choi, Chia-Ju Liu, Saad Nadeem, Shan Tan, Hualiang Zhong, Wengen Chen, Abraham J. Wu, James G. Mechalakos, Joseph O. Deasy, Wei Lu
Quantification of local metabolic tumor volume (MTV) chan-ges after Chemo-radiotherapy would allow accurate tumor response evaluation.
1 code implementation • 24 Aug 2018 • Wookjin Choi, Saad Nadeem, Sadegh Riyahi, Joseph O. Deasy, Allen Tannenbaum, Wei Lu
The spiculation quantification measures was then applied to the radiomics framework for pathological malignancy prediction with reproducible semi-automatic segmentation of nodule.