no code implementations • 17 Apr 2024 • Fakrul Islam Tushar, Liesbeth Vancoillie, Cindy McCabe, Amareswararao Kavuri, Lavsen Dahal, Brian Harrawood, Milo Fryling, Mojtaba Zarei, Saman Sotoudeh-Paima, Fong Chi Ho, Dhrubajyoti Ghosh, Sheng Luo, W. Paul Segars, Ehsan Abadi, Kyle J. Lafata, Ehsan Samei, Joseph Y. Lo
Objectives: To establish a virtual imaging trial (VIT) platform that accurately simulates real-world lung screening trials (LSTs) to assess the diagnostic accuracy of CT and CXR modalities.
1 code implementation • 6 Feb 2024 • Fakrul Islam Tushar, Vincent M. D'Anniballe, Geoffrey D. Rubin, Joseph Y. Lo
First, we examined model tolerance for noisy data by incrementally increasing error in the labels within the training data.
no code implementations • 15 Sep 2023 • Kaouther Mouheb, Mobina Ghojogh Nejad, Lavsen Dahal, Ehsan Samei, W. Paul Segars, Joseph Y. Lo
In this study, we leverage recent advancements in geometric deep learning and denoising diffusion probabilistic models to refine the segmentation results of the large intestine.
1 code implementation • 17 Aug 2023 • Fakrul Islam Tushar, Lavsen Dahal, Saman Sotoudeh-Paima, Ehsan Abadi, W. Paul Segars, Ehsan Samei, Joseph Y. Lo
In this study, COVID-19 serves as a case example to unveil the intrinsic and extrinsic factors influencing AI performance.
no code implementations • 7 Mar 2022 • Fakrul Islam Tushar, Ehsan Abadi, Saman Sotoudeh-Paima, Rafael B. Fricks, Maciej A. Mazurowski, W. Paul Segars, Ehsan Samei, Joseph Y. Lo
However, performance dropped to an AUC of 0. 65 and 0. 69 when evaluated on clinical and our simulated CVIT-COVID dataset.
no code implementations • 3 Mar 2022 • Fakrul Islam Tushar, Husam Nujaim, Wanyi Fu, Ehsan Abadi, Maciej A. Mazurowski, Ehsan Samei, William P. Segars, Joseph Y. Lo
This demonstrates that quality data is the key to improving the model's performance.
no code implementations • 23 Feb 2022 • Fakrul Islam Tushar, Vincent M. D'Anniballe, Geoffrey D. Rubin, Ehsan Samei, Joseph Y. Lo
Despite the potential of weakly supervised learning to automatically annotate massive amounts of data, little is known about its limitations for use in computer-aided diagnosis (CAD).
no code implementations • 12 Jul 2021 • Alina Jade Barnett, Fides Regina Schwartz, Chaofan Tao, Chaofan Chen, Yinhao Ren, Joseph Y. Lo, Cynthia Rudin
Compared to other methods, our model detects clinical features (mass margins) with equal or higher accuracy, provides a more detailed explanation of its prediction, and is better able to differentiate the classification-relevant parts of the image.
no code implementations • 23 Mar 2021 • Alina Jade Barnett, Fides Regina Schwartz, Chaofan Tao, Chaofan Chen, Yinhao Ren, Joseph Y. Lo, Cynthia Rudin
Mammography poses important challenges that are not present in other computer vision tasks: datasets are small, confounding information is present, and it can be difficult even for a radiologist to decide between watchful waiting and biopsy based on a mammogram alone.
1 code implementation • 5 Feb 2021 • Vincent M. D'Anniballe, Fakrul Islam Tushar, Khrystyna Faryna, Songyue Han, Maciej A. Mazurowski, Geoffrey D. Rubin, Joseph Y. Lo
Pre-trained models outperformed random initialization across all diseases.
1 code implementation • 13 Nov 2020 • Mateusz Buda, Ashirbani Saha, Ruth Walsh, Sujata Ghate, Nianyi Li, Albert Święcicki, Joseph Y. Lo, Maciej A. Mazurowski
While breast cancer screening has been one of the most studied medical imaging applications of artificial intelligence, the development and evaluation of the algorithms are hindered due to the lack of well-annotated large-scale publicly available datasets.
1 code implementation • 31 Oct 2020 • Anindo Saha, Fakrul I. Tushar, Khrystyna Faryna, Vincent M. D'Anniballe, Rui Hou, Maciej A. Mazurowski, Geoffrey D. Rubin, Joseph Y. Lo
Second, segmentation and classification models are connected with two different feature aggregation strategies to enhance the classification performance.
no code implementations • 20 Aug 2020 • Wanyi Fu, Shobhit Sharma, Ehsan Abadi, Alexandros-Stavros Iliopoulos, Qi. Wang, Joseph Y. Lo, Xiaobai Sun, William P. Segars, Ehsan Samei
Objective: This study aims to develop and validate a novel framework, iPhantom, for automated creation of patient-specific phantoms or digital-twins (DT) using patient medical images.
1 code implementation • 3 Aug 2020 • Fakrul Islam Tushar, Vincent M. D'Anniballe, Rui Hou, Maciej A. Mazurowski, Wanyi Fu, Ehsan Samei, Geoffrey D. Rubin, Joseph Y. Lo
Purpose: To design multi-disease classifiers for body CT scans for three different organ systems using automatically extracted labels from radiology text reports. Materials & Methods: This retrospective study included a total of 12, 092 patients (mean age 57 +- 18; 6, 172 women) for model development and testing (from 2012-2017).
1 code implementation • 12 Feb 2020 • Rachel Lea Draelos, David Dov, Maciej A. Mazurowski, Joseph Y. Lo, Ricardo Henao, Geoffrey D. Rubin, Lawrence Carin
This model reached a classification performance of AUROC greater than 0. 90 for 18 abnormalities, with an average AUROC of 0. 773 for all 83 abnormalities, demonstrating the feasibility of learning from unfiltered whole volume CT data.