Search Results for author: Julia Wolleb

Found 15 papers, 11 papers with code

Binary Noise for Binary Tasks: Masked Bernoulli Diffusion for Unsupervised Anomaly Detection

no code implementations18 Mar 2024 Julia Wolleb, Florentin Bieder, Paul Friedrich, Peter Zhang, Alicia Durrer, Philippe C. Cattin

As diffusion-based methods require a lot of GPU memory and have long sampling times, we present a novel and fast unsupervised anomaly detection approach based on latent Bernoulli diffusion models.

Denoising Image Generation +1

WDM: 3D Wavelet Diffusion Models for High-Resolution Medical Image Synthesis

1 code implementation29 Feb 2024 Paul Friedrich, Julia Wolleb, Florentin Bieder, Alicia Durrer, Philippe C. Cattin

Due to the three-dimensional nature of CT- or MR-scans, generative modeling of medical images is a particularly challenging task.

Image Generation Medical Image Generation +1

Denoising Diffusion Models for Inpainting of Healthy Brain Tissue

no code implementations27 Feb 2024 Alicia Durrer, Philippe C. Cattin, Julia Wolleb

We use a 2D model that is trained using slices in which healthy tissue was cropped out and is learned to be inpainted again.

Denoising SSIM

Generative AI for Medical Imaging: extending the MONAI Framework

2 code implementations27 Jul 2023 Walter H. L. Pinaya, Mark S. Graham, Eric Kerfoot, Petru-Daniel Tudosiu, Jessica Dafflon, Virginia Fernandez, Pedro Sanchez, Julia Wolleb, Pedro F. da Costa, Ashay Patel, Hyungjin Chung, Can Zhao, Wei Peng, Zelong Liu, Xueyan Mei, Oeslle Lucena, Jong Chul Ye, Sotirios A. Tsaftaris, Prerna Dogra, Andrew Feng, Marc Modat, Parashkev Nachev, Sebastien Ourselin, M. Jorge Cardoso

We have implemented these models in a generalisable fashion, illustrating that their results can be extended to 2D or 3D scenarios, including medical images with different modalities (like CT, MRI, and X-Ray data) and from different anatomical areas.

Anomaly Detection Denoising +2

Diffusion Models for Contrast Harmonization of Magnetic Resonance Images

no code implementations14 Mar 2023 Alicia Durrer, Julia Wolleb, Florentin Bieder, Tim Sinnecker, Matthias Weigel, Robin Sandkühler, Cristina Granziera, Özgür Yaldizli, Philippe C. Cattin

We map images from the source contrast to the target contrast for both directions, from 3 T to 1. 5 T and from 1. 5 T to 3 T. As we only want to change the contrast, not the anatomical information, our method uses the original image to guide the image-to-image translation process by adding structural information.

Image-to-Image Translation

The Swiss Army Knife for Image-to-Image Translation: Multi-Task Diffusion Models

no code implementations6 Apr 2022 Julia Wolleb, Robin Sandkühler, Florentin Bieder, Philippe C. Cattin

We build on a method for image-to-image translation using denoising diffusion implicit models and include a regression problem and a segmentation problem for guiding the image generation to the desired output.

Denoising Image-to-Image Translation +3

Diffusion Models for Medical Anomaly Detection

2 code implementations8 Mar 2022 Julia Wolleb, Florentin Bieder, Robin Sandkühler, Philippe C. Cattin

In medical applications, weakly supervised anomaly detection methods are of great interest, as only image-level annotations are required for training.

Denoising Image-to-Image Translation +3

Diffusion Models for Implicit Image Segmentation Ensembles

3 code implementations6 Dec 2021 Julia Wolleb, Robin Sandkühler, Florentin Bieder, Philippe Valmaggia, Philippe C. Cattin

By modifying the training and sampling scheme, we show that diffusion models can perform lesion segmentation of medical images.

Brain Tumor Segmentation Image Segmentation +3

Learn to Ignore: Domain Adaptation for Multi-Site MRI Analysis

1 code implementation13 Oct 2021 Julia Wolleb, Robin Sandkühler, Florentin Bieder, Muhamed Barakovic, Nouchine Hadjikhani, Athina Papadopoulou, Özgür Yaldizli, Jens Kuhle, Cristina Granziera, Philippe C. Cattin

The limited availability of large image datasets, mainly due to data privacy and differences in acquisition protocols or hardware, is a significant issue in the development of accurate and generalizable machine learning methods in medicine.

BIG-bench Machine Learning Classification +1

DeScarGAN: Disease-Specific Anomaly Detection with Weak Supervision

1 code implementation28 Jul 2020 Julia Wolleb, Robin Sandkühler, Philippe C. Cattin

In this work, we present a weakly supervised and detail-preserving method that is able to detect structural changes of existing anatomical structures.

Anomaly Detection

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