no code implementations • 9 Apr 2018 • Randal Burns, Eric Perlman, Alex Baden, William Gray Roncal, Ben Falk, Vikram Chandrashekhar, Forrest Collman, Sharmishtaa Seshamani, Jesse Patsolic, Kunal Lillaney, Michael Kazhdan, Robert Hider Jr., Derek Pryor, Jordan Matelsky, Timothy Gion, Priya Manavalan, Brock Wester, Mark Chevillet, Eric T. Trautman, Khaled Khairy, Eric Bridgeford, Dean M. Kleissas, Daniel J. Tward, Ailey K. Crow, Matthew A. Wright, Michael I. Miller, Stephen J. Smith, R. Jacob Vogelstein, Karl Deisseroth, Joshua T. Vogelstein
Big imaging data is becoming more prominent in brain sciences across spatiotemporal scales and phylogenies.
Neurons and Cognition Quantitative Methods
no code implementations • 1 Dec 2016 • Kwame S. Kutten, Nicolas Charon, Michael I. Miller, J. T. Ratnanather, Jordan Matelsky, Alexander D. Baden, Kunal Lillaney, Karl Deisseroth, Li Ye, Joshua T. Vogelstein
Due to the novelty of this microscopy technique it is impractical to use absolute intensity values to align these images to existing standard atlases.
1 code implementation • 6 May 2016 • Kwame S. Kutten, Joshua T. Vogelstein, Nicolas Charon, Li Ye, Karl Deisseroth, Michael I. Miller
Therefore, we developed a method (Mask-LDDMM) for registering CLARITY images, that automatically find the brain boundary and learns the optimal deformation between the brain and atlas masks.
