Search Results for author: Karl Kumbier

Found 7 papers, 5 papers with code

Curating a COVID-19 data repository and forecasting county-level death counts in the United States

1 code implementation16 May 2020 Nick Altieri, Rebecca L. Barter, James Duncan, Raaz Dwivedi, Karl Kumbier, Xiao Li, Robert Netzorg, Briton Park, Chandan Singh, Yan Shuo Tan, Tiffany Tang, Yu Wang, Chao Zhang, Bin Yu

We use this data to develop predictions and corresponding prediction intervals for the short-term trajectory of COVID-19 cumulative death counts at the county-level in the United States up to two weeks ahead.

COVID-19 Tracking Decision Making +2

A Debiased MDI Feature Importance Measure for Random Forests

3 code implementations NeurIPS 2019 Xiao Li, Yu Wang, Sumanta Basu, Karl Kumbier, Bin Yu

Based on the original definition of MDI by Breiman et al. for a single tree, we derive a tight non-asymptotic bound on the expected bias of MDI importance of noisy features, showing that deep trees have higher (expected) feature selection bias than shallow ones.

Feature Importance feature selection +1

Veridical Data Science

no code implementations23 Jan 2019 Bin Yu, Karl Kumbier

It augments predictability and computability with an overarching stability principle for the data science life cycle.

Two-sample testing

Interpretable machine learning: definitions, methods, and applications

6 code implementations14 Jan 2019 W. James Murdoch, Chandan Singh, Karl Kumbier, Reza Abbasi-Asl, Bin Yu

Official code for using / reproducing ACD (ICLR 2019) from the paper "Hierarchical interpretations for neural network predictions" https://arxiv. org/abs/1806. 05337

BIG-bench Machine Learning Feature Importance +1

Signed iterative random forests to identify enhancer-associated transcription factor binding

1 code implementation16 Oct 2018 Karl Kumbier, Sumanta Basu, Erwin Frise, Susan E. Celniker, James B. Brown, Susan Celniker, Bin Yu

Standard ChIP-seq peak calling pipelines seek to differentiate biochemically reproducible signals of individual genomic elements from background noise.

Interpretable Machine Learning

Iterative Random Forests to detect predictive and stable high-order interactions

4 code implementations26 Jun 2017 Sumanta Basu, Karl Kumbier, James B. Brown, Bin Yu

Genomics has revolutionized biology, enabling the interrogation of whole transcriptomes, genome-wide binding sites for proteins, and many other molecular processes.

Vocal Bursts Intensity Prediction

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