no code implementations • NAACL (CLPsych) 2022 • Kevin Lybarger, Justin Tauscher, Xiruo Ding, Dror Ben-Zeev, Trevor Cohen
In this work, we automatically identify distorted thinking in text-based patient-therapist exchanges, investigating the role of conversation history (context) in distortion prediction.
no code implementations • NAACL (ACL) 2022 • Xiruo Ding, Kevin Lybarger, Justin Tauscher, Trevor Cohen
Performance improvements with an augmented model, MentalBERT, exceed those obtained with data augmentation.
1 code implementation • 31 Mar 2024 • Yujuan Fu, Giridhar Kaushik Ramachandran, Nicholas J Dobbins, Namu Park, Michael Leu, Abby R. Rosenberg, Kevin Lybarger, Fei Xia, Ozlem Uzuner, Meliha Yetisgen
In this work, we present a novel annotated corpus, the Pediatric Social History Annotation Corpus (PedSHAC), and evaluate the automatic extraction of detailed SDoH representations using fine-tuned and in-context learning methods with Large Language Models (LLMs).
no code implementations • 27 Mar 2024 • Namu Park, Kevin Lybarger, Giridhar Kaushik Ramachandran, Spencer Lewis, Aashka Damani, Ozlem Uzuner, Martin Gunn, Meliha Yetisgen
Here, we introduce the Corpus of Annotated Medical Imaging Reports (CAMIR), which includes 609 annotated radiology reports from three imaging modality types: Computed Tomography, Magnetic Resonance Imaging, and Positron Emission Tomography-Computed Tomography.
no code implementations • 26 Jan 2024 • Md Mushfiqur Rahman, Mohammad Sabik Irbaz, Kai North, Michelle S. Williams, Marcos Zampieri, Kevin Lybarger
Our innovative RLHF reward function surpassed existing RL text simplification reward functions in effectiveness.
no code implementations • 12 Jun 2023 • Giridhar Kaushik Ramachandran, Yujuan Fu, Bin Han, Kevin Lybarger, Nicholas J Dobbins, Özlem Uzuner, Meliha Yetisgen
Social determinants of health (SDOH) documented in the electronic health record through unstructured text are increasingly being studied to understand how SDOH impacts patient health outcomes.
no code implementations • 26 Apr 2023 • Giridhar Kaushik Ramachandran, Haritha Gangavarapu, Kevin Lybarger, Ozlem Uzuner
The Reddit Health Online Talk (RedHot) corpus contains posts from medical condition-related subreddits with annotations characterizing the patient experience and medical conditions.
1 code implementation • 13 Jan 2023 • Kevin Lybarger, Meliha Yetisgen, Özlem Uzuner
Results: A total of 15 teams participated, and the top teams utilized pretrained deep learning LM.
1 code implementation • 14 Dec 2022 • Kevin Lybarger, Nicholas J Dobbins, Ritche Long, Angad Singh, Patrick Wedgeworth, Ozlem Ozuner, Meliha Yetisgen
In an EHR case study, we applied the SDOH extractor to a large clinical data set with 225, 089 patients and 430, 406 notes with social history sections and compared the extracted SDOH information with existing structured data.
no code implementations • 20 Sep 2022 • Sitong Zhou, Kevin Lybarger, Meliha Yetisgen, Mari Ostendorf
To reduce reliance on domain-specific features, we propose a domain generalization method that dynamically masks frequent symptoms words in the source domain.
no code implementations • 17 Aug 2022 • Giridhar Kaushik Ramachandran, Kevin Lybarger, Yaya Liu, Diwakar Mahajan, Jennifer J. Liang, Ching-Huei Tsou, Meliha Yetisgen, Özlem Uzuner
An accurate and detailed account of patient medications, including medication changes within the patient timeline, is essential for healthcare providers to provide appropriate patient care.
1 code implementation • 27 Dec 2021 • Wilson Lau, Kevin Lybarger, Martin L. Gunn, Meliha Yetisgen
In this paper, we present a new corpus of radiology reports annotated with clinical findings.
no code implementations • 20 Aug 2021 • Kevin Lybarger, Aashka Damani, Martin Gunn, Ozlem Uzuner, Meliha Yetisgen
Medical imaging reports distill the findings and observations of radiologists, creating an unstructured textual representation of unstructured medical images.
no code implementations • 10 Mar 2021 • Kevin Lybarger, Linzee Mabrey, Matthew Thau, Pavan K. Bhatraju, Mark Wurfel, Meliha Yetisgen
We explore the automatic identification of ARDS indicators and confounding factors in free-text chest radiograph reports.
no code implementations • 2 Dec 2020 • Kevin Lybarger, Mari Ostendorf, Matthew Thompson, Meliha Yetisgen
In a secondary use application, we explored the prediction of COVID-19 test results using structured patient data (e. g. vital signs and laboratory results) and automatically extracted symptom information.
no code implementations • 11 Apr 2020 • Kevin Lybarger, Mari Ostendorf, Meliha Yetisgen
The Social History Annotation Corpus (SHAC) includes 4, 480 social history sections with detailed annotation for 12 SDOH characterizing the status, extent, and temporal information of 18K distinct events.