A Graph Neural Network Approach to Automated Model Building in Cryo-EM Maps

1 code implementation • 30 Sep 2022 • Kiarash Jamali, Dari Kimanius, Sjors H. W. Scheres

Electron cryo-microscopy (cryo-EM) produces three-dimensional (3D) maps of the electrostatic potential of biological macromolecules, including proteins.

Protein Structure Prediction

An Inductive Bias for Distances: Neural Nets that Respect the Triangle Inequality

2 code implementations • ICLR 2020 • Silviu Pitis, Harris Chan, Kiarash Jamali, Jimmy Ba

When defining distances, the triangle inequality has proven to be a useful constraint, both theoretically--to prove convergence and optimality guarantees--and empirically--as an inductive bias.

Inductive Bias Metric Learning +3

ChainGAN: A sequential approach to GANs

1 code implementation • ICLR 2019 • Safwan Hossain, Kiarash Jamali, Yuchen Li, Frank Rudzicz

Current approaches attempt to learn the transformation from a noise sample to a generated data sample in one shot.

DeepConsensus: using the consensus of features from multiple layers to attain robust image classification

2 code implementations • 18 Nov 2018 • Yuchen Li, Safwan Hossain, Kiarash Jamali, Frank Rudzicz

We consider a classifier whose test set is exposed to various perturbations that are not present in the training set.

General Classification Image Classification