Search Results for author: Kim Branson

Found 4 papers, 2 papers with code

Generalising sequence models for epigenome predictions with tissue and assay embeddings

no code implementations22 Aug 2023 Jacob Deasy, Ron Schwessinger, Ferran Gonzalez, Stephen Young, Kim Branson

Sequence modelling approaches for epigenetic profile prediction have recently expanded in terms of sequence length, model size, and profile diversity.

All You Need is Color: Image based Spatial Gene Expression Prediction using Neural Stain Learning

no code implementations23 Aug 2021 Muhammad Dawood, Kim Branson, Nasir M. Rajpoot, Fayyaz ul Amir Afsar Minhas

"Is it possible to predict expression levels of different genes at a given spatial location in the routine histology image of a tumor section by modeling its stain absorption characteristics?"

ALBRT: Cellular Composition Prediction in Routine Histology Images

1 code implementation18 Aug 2021 Muhammad Dawood, Kim Branson, Nasir M. Rajpoot, Fayyaz ul Amir Afsar Minhas

Cellular composition prediction, i. e., predicting the presence and counts of different types of cells in the tumor microenvironment from a digitized image of a Hematoxylin and Eosin (H&E) stained tissue section can be used for various tasks in computational pathology such as the analysis of cellular topology and interactions, subtype prediction, survival analysis, etc.

Contrastive Learning Survival Analysis

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