no code implementations • NeurIPS 2018 • Rui Li, Kishan Kc, Feng Cui, Justin Domke, Anne Haake
This paper studies statistical relationships among components of high-dimensional observations varying across non-random covariates.
no code implementations • 3 Jun 2023 • Minh Van Nguyen, Kishan Kc, Toan Nguyen, Thien Huu Nguyen, Ankit Chadha, Thuy Vu
In this paper, we propose to improve the candidate scoring by explicitly incorporating the dependencies between question-context and answer-context into the final representation of a candidate.
no code implementations • 22 Nov 2022 • Kishan Kc, Rui Li, Paribesh Regmi, Anne R. Haake
Experiments on four interaction datasets show that our proposed method achieves accurate and calibrated predictions.
1 code implementation • 16 Oct 2020 • Kishan Kc, Rui Li, Feng Cui, Anne Haake
Recently, graph neural networks have been proposed to effectively learn representations for biomedical entities and achieved state-of-the-art results in biomedical interaction prediction.
Ranked #1 on Link Prediction on Drug-target interactions
1 code implementation • 16 Oct 2020 • Kishan Kc, Feng Cui, Anne Haake, Rui Li
Although various deep learning models in Siamese architecture have been proposed to model PPIs from sequences, these methods are computationally expensive for a large number of PPIs due to the pairwise encoding process.
1 code implementation • BMC Systems Biology 2019 • Kishan KC, Rui Li, Feng Cui, Qi Yu, Anne R. Haake
However, it is still a challenging task to aggregate heterogeneous biological information such as gene expression and gene interactions to achieve more accurate inference for prediction and discovery of new gene interactions.
Ranked #1 on Gene Interaction Prediction on BioGRID(yeast) (using extra training data)