A Graph Based Neural Network Approach to Immune Profiling of Multiplexed Tissue Samples

no code implementations • 1 Feb 2022 • Natalia Garcia Martin, Stefano Malacrino, Marta Wojciechowska, Leticia Campo, Helen Jones, David C. Wedge, Chris Holmes, Korsuk Sirinukunwattana, Heba Sailem, Clare Verrill, Jens Rittscher

Multiplexed immunofluorescence provides an unprecedented opportunity for studying specific cell-to-cell and cell microenvironment interactions.

Improving Whole Slide Segmentation Through Visual Context - A Systematic Study

no code implementations • 11 Jun 2018 • Korsuk Sirinukunwattana, Nasullah Khalid Alham, Clare Verrill, Jens Rittscher

While challenging, the dense segmentation of histology images is a necessary first step to assess changes in tissue architecture and cellular morphology.

General Classification Image Classification +1

Why rankings of biomedical image analysis competitions should be interpreted with care

no code implementations • 6 Jun 2018 • Lena Maier-Hein, Matthias Eisenmann, Annika Reinke, Sinan Onogur, Marko Stankovic, Patrick Scholz, Tal Arbel, Hrvoje Bogunovic, Andrew P. Bradley, Aaron Carass, Carolin Feldmann, Alejandro F. Frangi, Peter M. Full, Bram van Ginneken, Allan Hanbury, Katrin Honauer, Michal Kozubek, Bennett A. Landman, Keno März, Oskar Maier, Klaus Maier-Hein, Bjoern H. Menze, Henning Müller, Peter F. Neher, Wiro Niessen, Nasir Rajpoot, Gregory C. Sharp, Korsuk Sirinukunwattana, Stefanie Speidel, Christian Stock, Danail Stoyanov, Abdel Aziz Taha, Fons van der Sommen, Ching-Wei Wang, Marc-André Weber, Guoyan Zheng, Pierre Jannin, Annette Kopp-Schneider

International challenges have become the standard for validation of biomedical image analysis methods.

Novel digital tissue phenotypic signatures of distant metastasis in colorectal cancer

no code implementations • 23 Jan 2018 • Korsuk Sirinukunwattana, David Snead, David Epstein, Zia Aftab, Imaad Mujeeb, Yee Wah Tsang, Ian Cree, Nasir Rajpoot

Distant metastasis is the major cause of death in colorectal cancer (CRC).

Gland Segmentation in Colon Histology Images: The GlaS Challenge Contest

no code implementations • 1 Mar 2016 • Korsuk Sirinukunwattana, Josien P. W. Pluim, Hao Chen, Xiaojuan Qi, Pheng-Ann Heng, Yun Bo Guo, Li Yang Wang, Bogdan J. Matuszewski, Elia Bruni, Urko Sanchez, Anton Böhm, Olaf Ronneberger, Bassem Ben Cheikh, Daniel Racoceanu, Philipp Kainz, Michael Pfeiffer, Martin Urschler, David R. J. Snead, Nasir M. Rajpoot

Colorectal adenocarcinoma originating in intestinal glandular structures is the most common form of colon cancer.