Search Results for author: Laurent Hébert-Dufresne

Found 24 papers, 14 papers with code

Temporal and probabilistic comparisons of epidemic interventions

no code implementations7 Feb 2023 Mariah C. Boudreau, Andrea J. Allen, Nicholas J. Roberts, Antoine Allard, Laurent Hébert-Dufresne

Forecasting disease spread is a critical tool to help public health officials design and plan public health interventions. However, the expected future state of an epidemic is not necessarily well defined as disease spread is inherently stochastic, contact patterns within a population are heterogeneous, and behaviors change.

Accurately summarizing an outbreak using epidemiological models takes time

1 code implementation20 Jan 2023 B. K. M. Case, Jean-Gabriel Young, Laurent Hébert-Dufresne

Recent outbreaks of monkeypox and Ebola, and worrying waves of COVID-19, influenza and respiratory syncytial virus, have all led to a sharp increase in the use of epidemiological models to estimate key epidemiological parameters.

The network epidemiology of an Ebola epidemic

no code implementations16 Nov 2021 Laurent Hébert-Dufresne, Jean-Gabriel Young, Jamie Bedson, Laura A. Skrip, Danielle Pedi, Mohamed F. Jalloh, Bastian Raulier, Olivier Lapointe-Gagné, Amara Jambai, Antoine Allard, Benjamin M. Althouse

We leverage the data collected by the surveillance and contact tracing protocols of the Sierra Leone Ministry of Health and Sanitation, the US Centers for Disease Control and Prevention, and other responding partners to validate a network epidemiology framework connecting the population (incidence), community (local forecasts), and individual (secondary infections) scales of disease transmission.

Epidemiology

Immunity-induced criticality of the genotype network of influenza A (H3N2) hemagglutinin

no code implementations25 Sep 2021 Blake J. M. Williams, C. Brandon Ogbunugafor, Benjamin M. Althouse, Laurent Hébert-Dufresne

We argue that: (i) genotype networks are driven by mutation and host immunity to explore a subspace of networks predictable in structure, and (ii) genotype networks provide an underlying structure necessary to capture the rich dynamics of multistrain epidemic models.

Predicting the diversity of early epidemic spread on networks

no code implementations7 Jul 2021 Andrea J. Allen, Mariah C. Boudreau, Nicholas J. Roberts, Antoine Allard, Laurent Hébert-Dufresne

We show how the challenge of inferring the early course of an epidemic falls on the randomness of disease spread more so than on the heterogeneity of contact patterns.

Universal nonlinear infection kernel from heterogeneous exposure on higher-order networks

1 code implementation18 Jan 2021 Guillaume St-Onge, Hanlin Sun, Antoine Allard, Laurent Hébert-Dufresne, Ginestra Bianconi

The colocation of individuals in different environments is an important prerequisite for exposure to infectious diseases on a social network.

Physics and Society Adaptation and Self-Organizing Systems

Impact and dynamics of hate and counter speech online

no code implementations16 Sep 2020 Joshua Garland, Keyan Ghazi-Zahedi, Jean-Gabriel Young, Laurent Hébert-Dufresne, Mirta Galesic

Citizen-generated counter speech is a promising way to fight hate speech and promote peaceful, non-polarized discourse.

Network comparison and the within-ensemble graph distance

2 code implementations6 Aug 2020 Harrison Hartle, Brennan Klein, Stefan McCabe, Alexander Daniels, Guillaume St-Onge, Charles Murphy, Laurent Hébert-Dufresne

Quantifying the differences between networks is a challenging and ever-present problem in network science.

Physics and Society Social and Information Networks

Localization, epidemic transitions, and unpredictability of multistrain epidemics with an underlying genotype network

no code implementations15 Jul 2020 Blake J. M. Williams, Guillaume St-Onge, Laurent Hébert-Dufresne

Mathematical disease modelling has long operated under the assumption that any one infectious disease is caused by one transmissible pathogen spreading among a population.

Stochasticity and heterogeneity in the transmission dynamics of SARS-CoV-2

1 code implementation27 May 2020 Benjamin M. Althouse, Edward A. Wenger, Joel C. Miller, Samuel V. Scarpino, Antoine Allard, Laurent Hébert-Dufresne, Hao Hu

SARS-CoV-2 causing COVID-19 disease has moved rapidly around the globe, infecting millions and killing hundreds of thousands.

Social confinement and mesoscopic localization of epidemics on networks

no code implementations12 Mar 2020 Guillaume St-Onge, Vincent Thibeault, Antoine Allard, Louis J. Dubé, Laurent Hébert-Dufresne

Recommendations around epidemics tend to focus on individual behaviors, with much less efforts attempting to guide event cancellations and other collective behaviors since most models lack the higher-order structure necessary to describe large gatherings.

Physics and Society Adaptation and Self-Organizing Systems

Beyond $R_0$: Heterogeneity in secondary infections and probabilistic epidemic forecasting

2 code implementations10 Feb 2020 Laurent Hébert-Dufresne, Benjamin M. Althouse, Samuel V. Scarpino, Antoine Allard

Lastly, we demonstrate that without data on the heterogeneity in secondary infections for emerging infectious diseases like COVID-19, the uncertainty in outbreak size ranges dramatically.

Populations and Evolution Applied Physics Physics and Society

On the accuracy of message-passing approaches to percolation in complex networks

1 code implementation25 Jun 2019 Antoine Allard, Laurent Hébert-Dufresne

In fact we find that the closer a non-tree network is to a tree, the worse the MPA accuracy becomes.

Physics and Society Statistical Mechanics

Interacting contagions are indistinguishable from social reinforcement

1 code implementation4 Jun 2019 Laurent Hébert-Dufresne, Samuel V. Scarpino, Jean-Gabriel Young

From fake news to innovative technologies, many contagions spread via a process of social reinforcement, where multiple exposures are distinct from prolonged exposure to a single source.

Physics and Society Dynamical Systems Populations and Evolution

Smeared phase transitions in percolation on real complex networks

2 code implementations1 Oct 2018 Laurent Hébert-Dufresne, Antoine Allard

Our results shed light not only on the nature of the percolation transition in complex systems, but also provide two important insights on the numerical and analytical tools we use to study them.

Physics and Society Disordered Systems and Neural Networks

Efficient sampling of spreading processes on complex networks using a composition and rejection algorithm

3 code implementations15 Aug 2018 Guillaume St-Onge, Jean-Gabriel Young, Laurent Hébert-Dufresne, Louis J. Dubé

Efficient stochastic simulation algorithms are of paramount importance to the study of spreading phenomena on complex networks.

Physics and Society Social and Information Networks

Percolation and the effective structure of complex networks

1 code implementation25 Apr 2018 Antoine Allard, Laurent Hébert-Dufresne

Analytical approaches to model the structure of complex networks can be distinguished into two groups according to whether they consider an intensive (e. g., fixed degree sequence and random otherwise) or an extensive (e. g., adjacency matrix) description of the network structure.

Physics and Society Statistical Mechanics

Phase transition in the recoverability of network history

1 code implementation25 Mar 2018 Jean-Gabriel Young, Guillaume St-Onge, Edward Laurence, Charles Murphy, Laurent Hébert-Dufresne, Patrick Desrosiers

Network growth processes can be understood as generative models of the structure and history of complex networks.

Finite size analysis of the detectability limit of the stochastic block model

1 code implementation31 Dec 2016 Jean-Gabriel Young, Patrick Desrosiers, Laurent Hébert-Dufresne, Edward Laurence, Louis J. Dubé

We then distinguish the concept of average detectability from the concept of instance-by-instance detectability and give explicit formulas for both definitions.

Physics and Society Information Theory Information Theory

Dynamics of beneficial epidemics

1 code implementation7 Apr 2016 Andrew Berdahl, Christa Brelsford, Caterina De Bacco, Marion Dumas, Vanessa Ferdinand, Joshua A. Grochow, Laurent Hébert-Dufresne, Yoav Kallus, Christopher P. Kempes, Artemy Kolchinsky, Daniel B. Larremore, Eric Libby, Eleanor A. Power, Caitlin A. Stern, Brendan Tracey

Third, in the context of dynamic social networks, we find that preferences for increased global infection accelerate spread and produce superexponential fixation, but preferences for local assortativity halt epidemics by disconnecting the infected from the susceptible.

Physics and Society Multiagent Systems Social and Information Networks Adaptation and Self-Organizing Systems Populations and Evolution

Multi-scale structure and topological anomaly detection via a new network statistic: The onion decomposition

1 code implementation29 Oct 2015 Laurent Hébert-Dufresne, Joshua A. Grochow, Antoine Allard

The onion spectrum is exactly as easy to compute as the k-cores: It is based on the stages at which each vertex gets removed from a graph in the standard algorithm for computing the k-cores.

Physics and Society Disordered Systems and Neural Networks Discrete Mathematics Social and Information Networks Combinatorics

Cannot find the paper you are looking for? You can Submit a new open access paper.