The VOROS: Lifting ROC curves to 3D

no code implementations • 28 Feb 2024 • Christopher Ratigan, Lenore Cowen

We study both this surface and introduce the VOROS, the volume over this ROC surface, as a 3D generalization of the 2D area under the ROC curve.

Current and future directions in network biology

no code implementations • 15 Sep 2023 • Marinka Zitnik, Michelle M. Li, Aydin Wells, Kimberly Glass, Deisy Morselli Gysi, Arjun Krishnan, T. M. Murali, Predrag Radivojac, Sushmita Roy, Anaïs Baudot, Serdar Bozdag, Danny Z. Chen, Lenore Cowen, Kapil Devkota, Anthony Gitter, Sara Gosline, Pengfei Gu, Pietro H. Guzzi, Heng Huang, Meng Jiang, Ziynet Nesibe Kesimoglu, Mehmet Koyuturk, Jian Ma, Alexander R. Pico, Nataša Pržulj, Teresa M. Przytycka, Benjamin J. Raphael, Anna Ritz, Roded Sharan, Yang shen, Mona Singh, Donna K. Slonim, Hanghang Tong, Xinan Holly Yang, Byung-Jun Yoon, Haiyuan Yu, Tijana Milenković

As such, it is expected to help shape short- and long-term vision for future computational and algorithmic research in network biology.

Data Integration

Diffusion State Distances: Multitemporal Analysis, Fast Algorithms, and Applications to Biological Networks

no code implementations • 7 Mar 2020 • Lenore Cowen, Kapil Devkota, Xiaozhe Hu, James M. Murphy, Kaiyi Wu

This article develops a theory for DSD based on the multitemporal emergence of mesoscopic equilibria in the underlying diffusion process.

Denoising Dimensionality Reduction