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Found 3 papers, 3 papers with code
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly
In this work, we introduce new distributed-memory parallel algorithms for overlap detection and layout simplification steps of de novo genome assembly, and implement them in the diBELLA 2D pipeline.
Distributed, Parallel, and Cluster Computing Genomics
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment
To highlight the impact of our work on a real-world application, we couple LOGAN with a many-to-many long-read alignment software called BELLA, and demonstrate that our implementation improves the overall BELLA runtime by up to 10. 6x.
Communication-Avoiding Optimization Methods for Distributed Massive-Scale Sparse Inverse Covariance Estimation
Across a variety of scientific disciplines, sparse inverse covariance estimation is a popular tool for capturing the underlying dependency relationships in multivariate data.
