Evaluating Protein-protein Interaction Predictors with a Novel 3-Dimensional Metric

no code implementations • 6 Nov 2015 • Haohan Wang, Madhavi K. Ganapathiraju

In order for the predicted interactions to be directly adopted by biologists, the ma- chine learning predictions have to be of high precision, regardless of recall.

Evaluation of Protein-protein Interaction Predictors with Noisy Partially Labeled Data Sets

no code implementations • 18 Sep 2015 • Haohan Wang, Madhavi K. Ganapathiraju

In this paper, we focused on the problem that non-availability of accurately labeled testing data sets in the domain of protein-protein interaction (PPI) prediction may lead to biased evaluation results.