no code implementations • 29 May 2023 • Maho Nakata, Toshiyuki Maeda
This article presents the "PubChemQC B3LYP/6-31G*//PM6" dataset, containing electronic properties of 85, 938, 443 molecules.
no code implementations • 1 May 2023 • Zhao Xu, Yaochen Xie, Youzhi Luo, Xuan Zhang, Xinyi Xu, Meng Liu, Kaleb Dickerson, Cheng Deng, Maho Nakata, Shuiwang Ji
Here, we propose a novel deep learning framework to predict 3D geometries from molecular graphs.
3 code implementations • 30 Sep 2021 • Zhao Xu, Youzhi Luo, Xuan Zhang, Xinyi Xu, Yaochen Xie, Meng Liu, Kaleb Dickerson, Cheng Deng, Maho Nakata, Shuiwang Ji
Here, we propose to predict the ground-state 3D geometries from molecular graphs using machine learning methods.
Ranked #1 on 3D Geometry Prediction on Molecule3D val
6 code implementations • 17 Mar 2021 • Weihua Hu, Matthias Fey, Hongyu Ren, Maho Nakata, Yuxiao Dong, Jure Leskovec
Enabling effective and efficient machine learning (ML) over large-scale graph data (e. g., graphs with billions of edges) can have a great impact on both industrial and scientific applications.
Ranked #1 on Knowledge Graphs on WikiKG90M-LSC
no code implementations • 12 Apr 2019 • Maho Nakata, Tomomi Shimazaki, Masatomo Hashimoto, Toshiyuki Maeda
We report on the largest dataset of optimized molecular geometries and electronic properties calculated by the PM6 method for 92. 9% of the 91. 2 million molecules cataloged in PubChem Compounds retrieved on Aug. 29, 2016.
Chemical Physics Materials Science
1 code implementation • 20 Jul 2012 • James S. M. Anderson, Maho Nakata, Ryo Igarashi, Katsuki Fujisawa, Makoto Yamashita
In this paper, we establish the utility of the RDM method when employing the $P$, $Q$, $G$, $T1$ and $T2^\prime$ conditions in the two-dimension al Hubbard model case and we conduct a thorough study applying the $4\times 4$ Hubbard model employing a coefficients.
Strongly Correlated Electrons