Search Results for author: Marcel Breeuwer

Found 10 papers, 4 papers with code

A Deep Learning Approach Utilizing Covariance Matrix Analysis for the ISBI Edited MRS Reconstruction Challenge

1 code implementation5 Jun 2023 Julian P. Merkofer, Dennis M. J. van de Sande, Sina Amirrajab, Gerhard S. Drenthen, Mitko Veta, Jacobus F. A. Jansen, Marcel Breeuwer, Ruud J. G. van Sloun

This work proposes a method to accelerate the acquisition of high-quality edited magnetic resonance spectroscopy (MRS) scans using machine learning models taking the sample covariance matrix as input.

Pathology Synthesis of 3D-Consistent Cardiac MR Images using 2D VAEs and GANs

1 code implementation9 Sep 2022 Sina Amirrajab, Cristian Lorenz, Juergen Weese, Josien Pluim, Marcel Breeuwer

We devise three approaches for label manipulation in the latent space of the trained VAE model; i) \textbf{intra-subject synthesis} aiming to interpolate the intermediate slices of a subject to increase the through-plane resolution, ii) \textbf{inter-subject synthesis} aiming to interpolate the geometry and appearance of intermediate images between two dissimilar subjects acquired with different scanner vendors, and iii) \textbf{pathology synthesis} aiming to synthesize a series of pseudo-pathological synthetic subjects with characteristics of a desired heart disease.

Image Generation Image Segmentation +1

sim2real: Cardiac MR Image Simulation-to-Real Translation via Unsupervised GANs

no code implementations9 Aug 2022 Sina Amirrajab, Yasmina Al Khalil, Cristian Lorenz, Jurgen Weese, Josien Pluim, Marcel Breeuwer

There has been considerable interest in the MR physics-based simulation of a database of virtual cardiac MR images for the development of deep-learning analysis networks.

Translation

Optimized Automated Cardiac MR Scar Quantification with GAN-Based Data Augmentation

1 code implementation27 Sep 2021 Didier R. P. R. M. Lustermans, Sina Amirrajab, Mitko Veta, Marcel Breeuwer, Cian M. Scannell

The mean DSC per-subject on the challenge test set, for the cascaded pipeline augmented by synthetic generated data, was 0. 86 (0. 03) and 0. 67 (0. 29) for myocardium and scar, respectively.

Data Augmentation

Physics-informed neural networks for myocardial perfusion MRI quantification

1 code implementation25 Nov 2020 Rudolf L. M. van Herten, Amedeo Chiribiri, Marcel Breeuwer, Mitko Veta, Cian M. Scannell

This study introduces physics-informed neural networks (PINNs) as a means to perform myocardial perfusion MR quantification, which provides a versatile scheme for the inference of kinetic parameters.

XCAT-GAN for Synthesizing 3D Consistent Labeled Cardiac MR Images on Anatomically Variable XCAT Phantoms

no code implementations27 Jul 2020 Sina Amirrajab, Samaneh Abbasi-Sureshjani, Yasmina Al Khalil, Cristian Lorenz, Juergen Weese, Josien Pluim, Marcel Breeuwer

Moreover, the improvement in utilizing synthetic images for augmenting the real data is evident through the reduction of Hausdorff distance up to 28% and an increase in the Dice score up to 5%, indicating a higher similarity to the ground truth in all dimensions.

Image Generation

4D Semantic Cardiac Magnetic Resonance Image Synthesis on XCAT Anatomical Model

no code implementations MIDL 2019 Samaneh Abbasi-Sureshjani, Sina Amirrajab, Cristian Lorenz, Juergen Weese, Josien Pluim, Marcel Breeuwer

Using the parameterized motion model of the XCAT heart, we generate labels for 25 time frames of the heart for one cardiac cycle at 18 locations for the short axis view.

Anatomy Generative Adversarial Network +2

Deep learning-based prediction of kinetic parameters from myocardial perfusion MRI

no code implementations27 Jul 2019 Cian M. Scannell, Piet van den Bosch, Amedeo Chiribiri, Jack Lee, Marcel Breeuwer, Mitko Veta

The quantification of myocardial perfusion MRI has the potential to provide a fast, automated and user-independent assessment of myocardial ischaemia.

Bayesian Inference

Hierarchical Bayesian myocardial perfusion quantification

no code implementations6 Jun 2019 Cian M. Scannell, Amedeo Chiribiri, Adriana D. M. Villa, Marcel Breeuwer, Jack Lee

Purpose: Tracer-kinetic models can be used for the quantitative assessment of contrast-enhanced MRI data.

Bayesian Inference

Invertible Orientation Scores of 3D Images

no code implementations28 May 2015 Michiel Janssen, Remco Duits, Marcel Breeuwer

The enhancement and detection of elongated structures in noisy image data is relevant for many biomedical applications.

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