1 code implementation • 2 May 2023 • MouCheng Xu, Yukun Zhou, Chen Jin, Marius de Groot, Daniel C. Alexander, Neil P. Oxtoby, Yipeng Hu, Joseph Jacob
In the remainder of the paper, we showcase the applications of pseudo-labelling and its generalised form, Bayesian Pseudo-Labelling, in the semi-supervised segmentation of medical images.
no code implementations • 15 Aug 2022 • Carole H. Sudre, Kimberlin Van Wijnen, Florian Dubost, Hieab Adams, David Atkinson, Frederik Barkhof, Mahlet A. Birhanu, Esther E. Bron, Robin Camarasa, Nish Chaturvedi, Yuan Chen, Zihao Chen, Shuai Chen, Qi Dou, Tavia Evans, Ivan Ezhov, Haojun Gao, Marta Girones Sanguesa, Juan Domingo Gispert, Beatriz Gomez Anson, Alun D. Hughes, M. Arfan Ikram, Silvia Ingala, H. Rolf Jaeger, Florian Kofler, Hugo J. Kuijf, Denis Kutnar, Minho Lee, Bo Li, Luigi Lorenzini, Bjoern Menze, Jose Luis Molinuevo, Yiwei Pan, Elodie Puybareau, Rafael Rehwald, Ruisheng Su, Pengcheng Shi, Lorna Smith, Therese Tillin, Guillaume Tochon, Helene Urien, Bas H. M. van der Velden, Isabelle F. van der Velpen, Benedikt Wiestler, Frank J. Wolters, Pinar Yilmaz, Marius de Groot, Meike W. Vernooij, Marleen de Bruijne
This challenge aimed to promote the development of methods for automated detection and segmentation of small and sparse imaging markers of cerebral small vessel disease, namely enlarged perivascular spaces (EPVS) (Task 1), cerebral microbleeds (Task 2) and lacunes of presumed vascular origin (Task 3) while leveraging weak and noisy labels.
1 code implementation • 8 Aug 2022 • Mou-Cheng Xu, Yukun Zhou, Chen Jin, Marius de Groot, Daniel C. Alexander, Neil P. Oxtoby, Yipeng Hu, Joseph Jacob
Secondly, we propose a semi-supervised medical image segmentation method purely based on the original pseudo labelling, namely SegPL.
2 code implementations • 23 Oct 2021 • Mou-Cheng Xu, Yukun Zhou, Chen Jin, Marius de Groot, Neil P. Oxtoby, Daniel C. Alexander, Joseph Jacob
The state-of-the-art SSL methods in image classification utilise consistency regularisation to learn unlabelled predictions which are invariant to input level perturbations.
1 code implementation • 28 Dec 2020 • Bo Li, Wiro J. Niessen, Stefan Klein, Marius de Groot, M. Arfan Ikram, Meike W. Vernooij, Esther E. Bron
This work presents a single-step deep-learning framework for longitudinal image analysis, coined Segis-Net.
no code implementations • 26 May 2020 • Bo Li, Marius de Groot, Rebecca M. E. Steketee, Rozanna Meijboom, Marion Smits, Meike W. Vernooij, M. Arfan Ikram, Jiren Liu, Wiro J. Niessen, Esther E. Bron
This 3D end-to-end method is trained to segment 25 WM tracts in aging individuals from a large population-based study (N=9752, 1. 5T MRI).
no code implementations • 12 Apr 2020 • Oliver Werner, Kimberlin M. H. van Wijnen, Wiro J. Niessen, Marius de Groot, Meike W. Vernooij, Florian Dubost, Marleen de Bruijne
We showed that networks optimized using only weak labels reflecting WMH volume generalized better for WMH volume prediction than networks optimized with voxel-wise segmentations of WMH.
no code implementations • 26 Aug 2019 • Bo Li, Marius de Groot, Meike Vernooij, Arfan Ikram, Wiro Niessen, Esther Bron
As a consequence, there is a large interest in the automatic segmentation of white matter tract in diffusion tensor MRI data.
no code implementations • 26 Aug 2019 • Bo Li, Wiro Niessen, Stefan Klein, Marius de Groot, Arfan Ikram, Meike Vernooij, Esther Bron
Registration between time-points is used either as a prior for segmentation in a subsequent time point or to perform segmentation in a common space.
1 code implementation • 1 Jul 2019 • Florian Dubost, Marleen de Bruijne, Marco Nardin, Adrian V. Dalca, Kathleen L. Donahue, Anne-Katrin Giese, Mark R. Etherton, Ona Wu, Marius de Groot, Wiro Niessen, Meike Vernooij, Natalia S. Rost, Markus D. Schirmer
In this work, we propose to automatically assess the quality of registration to an atlas in clinical FLAIR MRI scans of the brain.