Search Results for author: Marius Staring

Found 23 papers, 11 papers with code

Seg-metrics: a Python package to compute segmentation metrics

1 code implementation12 Jan 2024 Jingnan Jia, Marius Staring, Berend C. Stoel

In response to a concerning trend of selectively emphasizing metrics in medical image segmentation (MIS) studies, we introduce \texttt{seg-metrics}, an open-source Python package for standardized MIS model evaluation.

Image Segmentation Medical Image Segmentation +1

CoNeS: Conditional neural fields with shift modulation for multi-sequence MRI translation

1 code implementation6 Sep 2023 Yunjie Chen, Marius Staring, Olaf M. Neve, Stephan R. Romeijn, Erik F. Hensen, Berit M. Verbist, Jelmer M. Wolterink, Qian Tao

In this paper, we propose Conditional Neural fields with Shift modulation (CoNeS), a model that takes voxel coordinates as input and learns a representation of the target images for multi-sequence MRI translation.

Translation

Joint optimization of a $β$-VAE for ECG task-specific feature extraction

1 code implementation28 Mar 2023 Viktor van der Valk, Douwe Atsma, Roderick Scherptong, Marius Staring

Electrocardiography is the most common method to investigate the condition of the heart through the observation of cardiac rhythm and electrical activity, for both diagnosis and monitoring purposes.

Local Implicit Neural Representations for Multi-Sequence MRI Translation

no code implementations2 Feb 2023 Yunjie Chen, Marius Staring, Jelmer M. Wolterink, Qian Tao

In this paper, we propose a novel MR image translation solution based on local implicit neural representations.

Anatomy SSIM +1

Comparing Bayesian Models for Organ Contouring in Head and Neck Radiotherapy

1 code implementation1 Nov 2021 Prerak Mody, Nicolas Chaves-de-Plaza, Klaus Hildebrandt, Rene van Egmond, Huib de Ridder, Marius Staring

However, in a QA context, a model should also have high uncertainty in inaccurate regions and low uncertainty in accurate regions.

Prediction of Lung CT Scores of Systemic Sclerosis by Cascaded Regression Neural Networks

no code implementations15 Oct 2021 Jingnan Jia, Marius Staring, Irene Hernández-Girón, Lucia J. M. Kroft, Anne A. Schouffoer, Berend C. Stoel

We used 227 3D CT scans to train and validate the first network, and the resulting 1135 axial slices were used in the second network.

regression

Joint Registration and Segmentation via Multi-Task Learning for Adaptive Radiotherapy of Prostate Cancer

no code implementations5 May 2021 Mohamed S. Elmahdy, Laurens Beljaards, Sahar Yousefi, Hessam Sokooti, Fons Verbeek, U. A. van der Heide, Marius Staring

In this paper, we formulate registration and segmentation as a joint problem via a Multi-Task Learning (MTL) setting, allowing these tasks to leverage their strengths and mitigate their weaknesses through the sharing of beneficial information.

Image Registration Medical Image Registration +1

ASL to PET Translation by a Semi-supervised Residual-based Attention-guided Convolutional Neural Network

1 code implementation8 Mar 2021 Sahar Yousefi, Hessam Sokooti, Wouter M. Teeuwisse, Dennis F. R. Heijtel, Aart J. Nederveen, Marius Staring, Matthias J. P. van Osch

To tackle this problem, we present a new semi-supervised multitask CNN which is trained on both paired data, i. e. ASL and PET scans, and unpaired data, i. e. only ASL scans, which alleviates the problem of training a network on limited paired data.

SSIM Translation

Esophageal Tumor Segmentation in CT Images using Dilated Dense Attention Unet (DDAUnet)

3 code implementations6 Dec 2020 Sahar Yousefi, Hessam Sokooti, Mohamed S. Elmahdy, Irene M. Lips, Mohammad T. Manzuri Shalmani, Roel T. Zinkstok, Frank J. W. M. Dankers, Marius Staring

The proposed network achieved a $\mathrm{DSC}$ value of $0. 79 \pm 0. 20$, a mean surface distance of $5. 4 \pm 20. 2mm$ and $95\%$ Hausdorff distance of $14. 7 \pm 25. 0mm$ for 287 test scans, demonstrating promising results with a simplified clinical workflow based on CT alone.

Tumor Segmentation

A Cross-Stitch Architecture for Joint Registration and Segmentation in Adaptive Radiotherapy

no code implementations MIDL 2019 Laurens Beljaards, Mohamed S. Elmahdy, Fons Verbeek, Marius Staring

The obtained performance as well as the inference speed make this a promising candidate for daily re-contouring in adaptive radiotherapy, potentially reducing treatment-related side effects and improving quality-of-life after treatment.

Segmentation

Patient-Specific Finetuning of Deep Learning Models for Adaptive Radiotherapy in Prostate CT

no code implementations17 Feb 2020 Mohamed S. Elmahdy, Tanuj Ahuja, U. A. van der Heide, Marius Staring

We investigate a transfer learning approach, fine-tuning the baseline CNN model to a specific patient, based on imaging acquired in earlier treatment fractions.

Transfer Learning

3D Convolutional Neural Networks Image Registration Based on Efficient Supervised Learning from Artificial Deformations

1 code implementation27 Aug 2019 Hessam Sokooti, Bob de Vos, Floris Berendsen, Mohsen Ghafoorian, Sahar Yousefi, Boudewijn P. F. Lelieveldt, Ivana Isgum, Marius Staring

We propose a supervised nonrigid image registration method, trained using artificial displacement vector fields (DVF), for which we propose and compare three network architectures.

Image Registration

Fast Dynamic Perfusion and Angiography Reconstruction using an end-to-end 3D Convolutional Neural Network

no code implementations24 Aug 2019 Sahar Yousefi, Lydiane Hirschler, Merlijn van der Plas, Mohamed S. Elmahdy, Hessam Sokooti, Matthias Van Osch, Marius Staring

Hadamard time-encoded pseudo-continuous arterial spin labeling (te-pCASL) is a signal-to-noise ratio (SNR)-efficient MRI technique for acquiring dynamic pCASL signals that encodes the temporal information into the labeling according to a Hadamard matrix.

SSIM

Pulmonary vessel tree matching for quantifying changes in vascular morphology

1 code implementation MICCAI2018 2018 Zhiwei Zhai, Marius Staring, Hideki Ota, Berend C. Stoel

Quantifying morphological changes may provide a non-invasive assessment of treatment effects in CTEPH patients, consistent with hemodynamic changes from invasive RHC.

A Deep Learning Framework for Unsupervised Affine and Deformable Image Registration

no code implementations17 Sep 2018 Bob D. de Vos, Floris F. Berendsen, Max A. Viergever, Hessam Sokooti, Marius Staring, Ivana Isgum

To circumvent the need for predefined examples, and thereby to increase convenience of training ConvNets for image registration, we propose the Deep Learning Image Registration (DLIR) framework for \textit{unsupervised} affine and deformable image registration.

Affine Image Registration Image Registration

A Novel Motion Detection Method Resistant to Severe Illumination Changes

no code implementations11 Dec 2016 Sahar Yousefi, M. T. Manzuri Shalmani, Jeremy Lin, Marius Staring

Recently, there has been a considerable attention given to the motion detection problem due to the explosive growth of its applications in video analysis and surveillance systems.

Clustering Motion Detection

Cannot find the paper you are looking for? You can Submit a new open access paper.