Search Results for author: Mark Jenkinson

Found 9 papers, 5 papers with code

SFHarmony: Source Free Domain Adaptation for Distributed Neuroimaging Analysis

1 code implementation ICCV 2023 Nicola K Dinsdale, Mark Jenkinson, Ana IL Namburete

Our method outperforms existing SFDA approaches across a range of realistic data scenarios, demonstrating the potential utility of our approach for MRI harmonisation and general SFDA problems.

Source-Free Domain Adaptation

Segmentation method for cerebral blood vessels from MRA using hysteresis

no code implementations9 Mar 2023 Georgia Kenyon, Stephan Lau, Michael A. Chappell, Mark Jenkinson

Due to the absence of open-source tools, we aim to develop a classical segmentation method that generates vessel ground truth from Magnetic Resonance Angiography for DL training of segmentation across a variety of modalities.

Segmentation

FedHarmony: Unlearning Scanner Bias with Distributed Data

1 code implementation31 May 2022 Nicola K Dinsdale, Mark Jenkinson, Ana IL Namburete

The ability to combine data across scanners and studies is vital for neuroimaging, to increase both statistical power and the representation of biological variability.

Federated Learning

Uncertainty categories in medical image segmentation: a study of source-related diversity

no code implementations1 Mar 2022 Luke Whitbread, Mark Jenkinson

Measuring uncertainties in the output of a deep learning method is useful in several ways, such as in assisting with interpretation of the outputs, helping build confidence with end users, and for improving the training and performance of the networks.

Image Segmentation Medical Image Segmentation +1

Mutual information neural estimation for unsupervised multi-modal registration of brain images

no code implementations25 Jan 2022 Gerard Snaauw, Michele Sasdelli, Gabriel Maicas, Stephan Lau, Johan Verjans, Mark Jenkinson, Gustavo Carneiro

We propose guiding the training of a deep learning-based registration method with MI estimation between an image-pair in an end-to-end trainable network.

Image Registration

Challenges for machine learning in clinical translation of big data imaging studies

1 code implementation7 Jul 2021 Nicola K Dinsdale, Emma Bluemke, Vaanathi Sundaresan, Mark Jenkinson, Stephen Smith, Ana IL Namburete

The combination of deep learning image analysis methods and large-scale imaging datasets offers many opportunities to imaging neuroscience and epidemiology.

BIG-bench Machine Learning Epidemiology +1

Self-supervised Lesion Change Detection and Localisation in Longitudinal Multiple Sclerosis Brain Imaging

no code implementations2 Jun 2021 Minh-Son To, Ian G Sarno, Chee Chong, Mark Jenkinson, Gustavo Carneiro

Hence, we introduce a new unsupervised anomaly detection and localisation method trained exclusively with serial images that do not contain any lesion changes.

Change Detection Decision Making +2

Brain tumour segmentation using a triplanar ensemble of U-Nets

1 code implementation24 May 2021 Vaanathi Sundaresan, Ludovica Griffanti, Mark Jenkinson

Our method achieved an evaluation score that was the equal 5th highest value (with our method ranking in 10th place) in the BraTS'20 challenge, with mean Dice values of 0. 81, 0. 89 and 0. 84 on ET, WT and TC regions respectively on the BraTS'20 unseen test dataset.

Brain Tumor Segmentation Segmentation +1

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