Search Results for author: Melanie Ganz
Found 8 papers, 3 papers with code
The Past, Present, and Future of the Brain Imaging Data Structure (BIDS)
no code implementations • 11 Sep 2023 • Russell A. Poldrack, Christopher J. Markiewicz, Stefan Appelhoff, Yoni K. Ashar, Tibor Auer, Sylvain Baillet, Shashank Bansal, Leandro Beltrachini, Christian G. Benar, Giacomo Bertazzoli, Suyash Bhogawar, Ross W. Blair, Marta Bortoletto, Mathieu Boudreau, Teon L. Brooks, Vince D. Calhoun, Filippo Maria Castelli, Patricia Clement, Alexander L Cohen, Julien Cohen-Adad, Sasha D'Ambrosio, Gilles de Hollander, María de la iglesia-Vayá, Alejandro de la Vega, Arnaud Delorme, Orrin Devinsky, Dejan Draschkow, Eugene Paul Duff, Elizabeth Dupre, Eric Earl, Oscar Esteban, Franklin W. Feingold, Guillaume Flandin, anthony galassi, Giuseppe Gallitto, Melanie Ganz, Rémi Gau, James Gholam, Satrajit S. Ghosh, Alessio Giacomel, Ashley G Gillman, Padraig Gleeson, Alexandre Gramfort, Samuel Guay, Giacomo Guidali, Yaroslav O. Halchenko, Daniel A. Handwerker, Nell Hardcastle, Peer Herholz, Dora Hermes, Christopher J. Honey, Robert B. Innis, Horea-Ioan Ioanas, Andrew Jahn, Agah Karakuzu, David B. Keator, Gregory Kiar, Balint Kincses, Angela R. Laird, Jonathan C. Lau, Alberto Lazari, Jon Haitz Legarreta, Adam Li, Xiangrui Li, Bradley C. Love, Hanzhang Lu, Camille Maumet, Giacomo Mazzamuto, Steven L. Meisler, Mark Mikkelsen, Henk Mutsaerts, Thomas E. Nichols, Aki Nikolaidis, Gustav Nilsonne, Guiomar Niso, Martin Norgaard, Thomas W Okell, Robert Oostenveld, Eduard Ort, Patrick J. Park, Mateusz Pawlik, Cyril R. Pernet, Franco Pestilli, Jan Petr, Christophe Phillips, Jean-Baptiste Poline, Luca Pollonini, Pradeep Reddy Raamana, Petra Ritter, Gaia Rizzo, Kay A. Robbins, Alexander P. Rockhill, Christine Rogers, Ariel Rokem, Chris Rorden, Alexandre Routier, Jose Manuel Saborit-Torres, Taylor Salo, Michael Schirner, Robert E. Smith, Tamas Spisak, Julia Sprenger, Nicole C. Swann, Martin Szinte, Sylvain Takerkart, Bertrand Thirion, Adam G. Thomas, Sajjad Torabian, Gael Varoquaux, Bradley Voytek, Julius Welzel, Martin Wilson, Tal Yarkoni, Krzysztof J. Gorgolewski
The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities.
Are demographically invariant models and representations in medical imaging fair?
no code implementations • 2 May 2023 • Eike Petersen, Enzo Ferrante, Melanie Ganz, Aasa Feragen
Medical imaging models have been shown to encode information about patient demographics such as age, race, and sex in their latent representation, raising concerns about their potential for discrimination.
Why is the winner the best?
no code implementations • CVPR 2023 • Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Sharib Ali, Vincent Andrearczyk, Marc Aubreville, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Veronika Cheplygina, Marie Daum, Marleen de Bruijne, Adrien Depeursinge, Reuben Dorent, Jan Egger, David G. Ellis, Sandy Engelhardt, Melanie Ganz, Noha Ghatwary, Gabriel Girard, Patrick Godau, Anubha Gupta, Lasse Hansen, Kanako Harada, Mattias Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Pierre Jannin, Ali Emre Kavur, Oldřich Kodym, Michal Kozubek, Jianning Li, Hongwei Li, Jun Ma, Carlos Martín-Isla, Bjoern Menze, Alison Noble, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Tim Rädsch, Jonathan Rafael-Patiño, Vivek Singh Bawa, Stefanie Speidel, Carole H. Sudre, Kimberlin Van Wijnen, Martin Wagner, Donglai Wei, Amine Yamlahi, Moi Hoon Yap, Chun Yuan, Maximilian Zenk, Aneeq Zia, David Zimmerer, Dogu Baran Aydogan, Binod Bhattarai, Louise Bloch, Raphael Brüngel, Jihoon Cho, Chanyeol Choi, Qi Dou, Ivan Ezhov, Christoph M. Friedrich, Clifton Fuller, Rebati Raman Gaire, Adrian Galdran, Álvaro García Faura, Maria Grammatikopoulou, SeulGi Hong, Mostafa Jahanifar, Ikbeom Jang, Abdolrahim Kadkhodamohammadi, Inha Kang, Florian Kofler, Satoshi Kondo, Hugo Kuijf, Mingxing Li, Minh Huan Luu, Tomaž Martinčič, Pedro Morais, Mohamed A. Naser, Bruno Oliveira, David Owen, Subeen Pang, Jinah Park, Sung-Hong Park, Szymon Płotka, Elodie Puybareau, Nasir Rajpoot, Kanghyun Ryu, Numan Saeed, Adam Shephard, Pengcheng Shi, Dejan Štepec, Ronast Subedi, Guillaume Tochon, Helena R. Torres, Helene Urien, João L. Vilaça, Kareem Abdul Wahid, Haojie Wang, Jiacheng Wang, Liansheng Wang, Xiyue Wang, Benedikt Wiestler, Marek Wodzinski, Fangfang Xia, Juanying Xie, Zhiwei Xiong, Sen yang, Yanwu Yang, Zixuan Zhao, Klaus Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein
The "typical" lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning.
On (assessing) the fairness of risk score models
no code implementations • 17 Feb 2023 • Eike Petersen, Melanie Ganz, Sune Hannibal Holm, Aasa Feragen
Further, we address how to assess the fairness of risk score models quantitatively, including a discussion of metric choices and meaningful statistical comparisons between groups.
Biomedical image analysis competitions: The state of current participation practice
no code implementations • 16 Dec 2022 • Matthias Eisenmann, Annika Reinke, Vivienn Weru, Minu Dietlinde Tizabi, Fabian Isensee, Tim J. Adler, Patrick Godau, Veronika Cheplygina, Michal Kozubek, Sharib Ali, Anubha Gupta, Jan Kybic, Alison Noble, Carlos Ortiz de Solórzano, Samiksha Pachade, Caroline Petitjean, Daniel Sage, Donglai Wei, Elizabeth Wilden, Deepak Alapatt, Vincent Andrearczyk, Ujjwal Baid, Spyridon Bakas, Niranjan Balu, Sophia Bano, Vivek Singh Bawa, Jorge Bernal, Sebastian Bodenstedt, Alessandro Casella, Jinwook Choi, Olivier Commowick, Marie Daum, Adrien Depeursinge, Reuben Dorent, Jan Egger, Hannah Eichhorn, Sandy Engelhardt, Melanie Ganz, Gabriel Girard, Lasse Hansen, Mattias Heinrich, Nicholas Heller, Alessa Hering, Arnaud Huaulmé, Hyunjeong Kim, Bennett Landman, Hongwei Bran Li, Jianning Li, Jun Ma, Anne Martel, Carlos Martín-Isla, Bjoern Menze, Chinedu Innocent Nwoye, Valentin Oreiller, Nicolas Padoy, Sarthak Pati, Kelly Payette, Carole Sudre, Kimberlin Van Wijnen, Armine Vardazaryan, Tom Vercauteren, Martin Wagner, Chuanbo Wang, Moi Hoon Yap, Zeyun Yu, Chun Yuan, Maximilian Zenk, Aneeq Zia, David Zimmerer, Rina Bao, Chanyeol Choi, Andrew Cohen, Oleh Dzyubachyk, Adrian Galdran, Tianyuan Gan, Tianqi Guo, Pradyumna Gupta, Mahmood Haithami, Edward Ho, Ikbeom Jang, Zhili Li, Zhengbo Luo, Filip Lux, Sokratis Makrogiannis, Dominik Müller, Young-tack Oh, Subeen Pang, Constantin Pape, Gorkem Polat, Charlotte Rosalie Reed, Kanghyun Ryu, Tim Scherr, Vajira Thambawita, Haoyu Wang, Xinliang Wang, Kele Xu, Hung Yeh, Doyeob Yeo, Yixuan Yuan, Yan Zeng, Xin Zhao, Julian Abbing, Jannes Adam, Nagesh Adluru, Niklas Agethen, Salman Ahmed, Yasmina Al Khalil, Mireia Alenyà, Esa Alhoniemi, Chengyang An, Talha Anwar, Tewodros Weldebirhan Arega, Netanell Avisdris, Dogu Baran Aydogan, Yingbin Bai, Maria Baldeon Calisto, Berke Doga Basaran, Marcel Beetz, Cheng Bian, Hao Bian, Kevin Blansit, Louise Bloch, Robert Bohnsack, Sara Bosticardo, Jack Breen, Mikael Brudfors, Raphael Brüngel, Mariano Cabezas, Alberto Cacciola, Zhiwei Chen, Yucong Chen, Daniel Tianming Chen, Minjeong Cho, Min-Kook Choi, Chuantao Xie Chuantao Xie, Dana Cobzas, Julien Cohen-Adad, Jorge Corral Acero, Sujit Kumar Das, Marcela de Oliveira, Hanqiu Deng, Guiming Dong, Lars Doorenbos, Cory Efird, Sergio Escalera, Di Fan, Mehdi Fatan Serj, Alexandre Fenneteau, Lucas Fidon, Patryk Filipiak, René Finzel, Nuno R. Freitas, Christoph M. Friedrich, Mitchell Fulton, Finn Gaida, Francesco Galati, Christoforos Galazis, Chang Hee Gan, Zheyao Gao, Shengbo Gao, Matej Gazda, Beerend Gerats, Neil Getty, Adam Gibicar, Ryan Gifford, Sajan Gohil, Maria Grammatikopoulou, Daniel Grzech, Orhun Güley, Timo Günnemann, Chunxu Guo, Sylvain Guy, Heonjin Ha, Luyi Han, Il Song Han, Ali Hatamizadeh, Tian He, Jimin Heo, Sebastian Hitziger, SeulGi Hong, Seungbum Hong, Rian Huang, Ziyan Huang, Markus Huellebrand, Stephan Huschauer, Mustaffa Hussain, Tomoo Inubushi, Ece Isik Polat, Mojtaba Jafaritadi, SeongHun Jeong, Bailiang Jian, Yuanhong Jiang, Zhifan Jiang, Yueming Jin, Smriti Joshi, Abdolrahim Kadkhodamohammadi, Reda Abdellah Kamraoui, Inha Kang, Junghwa Kang, Davood Karimi, April Khademi, Muhammad Irfan Khan, Suleiman A. Khan, Rishab Khantwal, Kwang-Ju Kim, Timothy Kline, Satoshi Kondo, Elina Kontio, Adrian Krenzer, Artem Kroviakov, Hugo Kuijf, Satyadwyoom Kumar, Francesco La Rosa, Abhi Lad, Doohee Lee, Minho Lee, Chiara Lena, Hao Li, Ling Li, Xingyu Li, Fuyuan Liao, Kuanlun Liao, Arlindo Limede Oliveira, Chaonan Lin, Shan Lin, Akis Linardos, Marius George Linguraru, Han Liu, Tao Liu, Di Liu, Yanling Liu, João Lourenço-Silva, Jingpei Lu, Jiangshan Lu, Imanol Luengo, Christina B. Lund, Huan Minh Luu, Yi Lv, Uzay Macar, Leon Maechler, Sina Mansour L., Kenji Marshall, Moona Mazher, Richard McKinley, Alfonso Medela, Felix Meissen, Mingyuan Meng, Dylan Miller, Seyed Hossein Mirjahanmardi, Arnab Mishra, Samir Mitha, Hassan Mohy-ud-Din, Tony Chi Wing Mok, Gowtham Krishnan Murugesan, Enamundram Naga Karthik, Sahil Nalawade, Jakub Nalepa, Mohamed Naser, Ramin Nateghi, Hammad Naveed, Quang-Minh Nguyen, Cuong Nguyen Quoc, Brennan Nichyporuk, Bruno Oliveira, David Owen, Jimut Bahan Pal, Junwen Pan, Wentao Pan, Winnie Pang, Bogyu Park, Vivek Pawar, Kamlesh Pawar, Michael Peven, Lena Philipp, Tomasz Pieciak, Szymon Plotka, Marcel Plutat, Fattaneh Pourakpour, Domen Preložnik, Kumaradevan Punithakumar, Abdul Qayyum, Sandro Queirós, Arman Rahmim, Salar Razavi, Jintao Ren, Mina Rezaei, Jonathan Adam Rico, ZunHyan Rieu, Markus Rink, Johannes Roth, Yusely Ruiz-Gonzalez, Numan Saeed, Anindo Saha, Mostafa Salem, Ricardo Sanchez-Matilla, Kurt Schilling, Wei Shao, Zhiqiang Shen, Ruize Shi, Pengcheng Shi, Daniel Sobotka, Théodore Soulier, Bella Specktor Fadida, Danail Stoyanov, Timothy Sum Hon Mun, Xiaowu Sun, Rong Tao, Franz Thaler, Antoine Théberge, Felix Thielke, Helena Torres, Kareem A. Wahid, Jiacheng Wang, Yifei Wang, Wei Wang, Xiong Wang, Jianhui Wen, Ning Wen, Marek Wodzinski, Ye Wu, Fangfang Xia, Tianqi Xiang, Chen Xiaofei, Lizhan Xu, Tingting Xue, Yuxuan Yang, Lin Yang, Kai Yao, Huifeng Yao, Amirsaeed Yazdani, Michael Yip, Hwanseung Yoo, Fereshteh Yousefirizi, Shunkai Yu, Lei Yu, Jonathan Zamora, Ramy Ashraf Zeineldin, Dewen Zeng, Jianpeng Zhang, Bokai Zhang, Jiapeng Zhang, Fan Zhang, Huahong Zhang, Zhongchen Zhao, Zixuan Zhao, Jiachen Zhao, Can Zhao, Qingshuo Zheng, Yuheng Zhi, Ziqi Zhou, Baosheng Zou, Klaus Maier-Hein, Paul F. Jäger, Annette Kopp-Schneider, Lena Maier-Hein
Of these, 84% were based on standard architectures.
Feature robustness and sex differences in medical imaging: a case study in MRI-based Alzheimer's disease detection
1 code implementation • 4 Apr 2022 • Eike Petersen, Aasa Feragen, Maria Luise da Costa Zemsch, Anders Henriksen, Oskar Eiler Wiese Christensen, Melanie Ganz
Instead, while logistic regression is fully robust to dataset composition, we find that CNN performance is generally improved for both male and female subjects when including more female subjects in the training dataset.
Multi-view consensus CNN for 3D facial landmark placement
1 code implementation • 14 Oct 2019 • Rasmus R. Paulsen, Kristine Aavild Juhl, Thilde Marie Haspang, Thomas Hansen, Melanie Ganz, Gudmundur Einarsson
The current state-of-the-art approaches have yet to gain from the dramatic increase in performance reported in human pose tracking and 2D facial landmark placement due to the use of deep convolutional neural networks (CNN).
Approximate False Positive Rate Control in Selection Frequency for Random Forest
1 code implementation • 10 Oct 2014 • Ender Konukoglu, Melanie Ganz
Random Forest has become one of the most popular tools for feature selection.
